Linking signal input, cell state, and spatial context to inflammatory responses

RA Gottschalk, RN Germain - Current Opinion in Immunology, 2024 - Elsevier
Signal integration is central to a causal understanding of appropriately scaled inflammatory
responses. Here, we discuss recent progress in our understanding of the stimulus–response …

The pore-forming apolipoprotein APOL7C drives phagosomal rupture and antigen cross-presentation by dendritic cells

GA Gonzales, S Huang, L Wilkinson, JA Nguyen… - Science …, 2024 - science.org
Conventional dendritic cells (cDCs) generate protective cytotoxic T lymphocyte (CTL)
responses against extracellular pathogens and tumors. This is achieved through a process …

[HTML][HTML] Single-cell stimulus-response gene expression trajectories reveal the stimulus specificities of dynamic responses by single macrophages

KM Sheu, A Pimplaskar, A Hoffmann - Molecular Cell, 2024 - cell.com
Macrophages induce the expression of hundreds of genes in response to immune threats.
However, current technology limits our ability to capture single-cell inducible gene …

Dynamical and combinatorial coding by MAPK p38 and NFκB in the inflammatory response of macrophages

S Luecke, X Guo, KM Sheu, A Singh… - Molecular Systems …, 2024 - embopress.org
Macrophages sense pathogens and orchestrate specific immune responses. Stimulus
specificity is thought to be achieved through combinatorial and dynamical coding by …

Signaling is the pathway to macrophage function

RA Gottschalk - Trends in immunology, 2023 - cell.com
Tissue and inflammatory contexts are well appreciated to shape macrophage function to
promote health or disease. However, there has been minimal progress towards …

The blueprint of logical decisions in a NF-κB signaling system

P Gautam, SK Sinha - ACS omega, 2024 - ACS Publications
Nearly identical cells can exhibit substantially different responses to the same stimulus that
causes phenotype diversity. Such interplay between phenotype diversity and the …

Uncoding the interdependency of tumor microenvironment and macrophage polarization: insights from a continuous network approach

U Avila-Ponce de León, A Vázquez-Jiménez… - Frontiers in …, 2023 - frontiersin.org
The balance between pro-and anti-inflammatory immune system responses is crucial to
preventing complex diseases like cancer. Macrophages are essential immune cells that …

Stimulus-response signaling dynamics characterize macrophage polarization states

A Singh, S Sen, M Iter, A Adelaja, S Luecke, X Guo… - Cell systems, 2024 - cell.com
The functional state of cells is dependent on their microenvironmental context. Prior studies
described how polarizing cytokines alter macrophage transcriptomes and epigenomes …

Reframing macrophage diversity with network motifs

GA Pizzurro, K Miller-Jensen - Trends in Immunology, 2023 - cell.com
A binary classification of macrophage activation as inflammatory or resolving does not
capture the diversity of macrophage states observed in tissues. However, framing …

Innate Immune Memory is Stimulus Specific

A O'Farrell, Z Niu, J Li, LC Van Eyndhoven, K Sarma… - bioRxiv, 2025 - biorxiv.org
Innate immune memory (also termed trained immunity) is defined in part by its ability to cross-
protect against heterologous pathogens, and can be generated by many different stimuli …