SOAX: a software for quantification of 3D biopolymer networks

T Xu, D Vavylonis, FC Tsai, GH Koenderink, W Nie… - Scientific reports, 2015 - nature.com
Filamentous biopolymer networks in cells and tissues are routinely imaged by confocal
microscopy. Image analysis methods enable quantitative study of the properties of these …

Theoretical study of vesicle shapes driven by coupling curved proteins and active cytoskeletal forces

M Fošnarič, S Penič, A Iglič, V Kralj-Iglič, M Drab… - Soft Matter, 2019 - pubs.rsc.org
Eukaryote cells have a flexible shape, which dynamically changes according to the function
performed by the cell. One mechanism for deforming the cell membrane into the desired …

Shape control of lipid bilayer membranes by confined actin bundles

FC Tsai, GH Koenderink - Soft Matter, 2015 - pubs.rsc.org
In living cells, lipid membranes and biopolymers determine each other's conformation in a
delicate force balance. Cellular polymers such as actin filaments are strongly confined by …

Balance of microtubule stiffness and cortical tension determines the size of blood cells with marginal band across species

S Dmitrieff, A Alsina, A Mathur… - Proceedings of the …, 2017 - National Acad Sciences
The fast bloodstream of animals is associated with large shear stresses. To withstand these
conditions, blood cells have evolved a special morphology and a specific internal …

Tumbling and tank-treading dynamics of individual ring polymers in shear flow

W Chen, J Chen, L An - Soft Matter, 2013 - pubs.rsc.org
The dynamics of individual ring polymers in a shear flow is studied by a hybrid mesoscale
simulation approach. New insight into the dynamics of ring polymers is provided: ring …

Overcurvature describes the buckling and folding of rings from curved origami to foldable tents

PO Mouthuy, M Coulombier, T Pardoen… - Nature …, 2012 - nature.com
Daily-life foldable items, such as popup tents, the curved origami sculptures exhibited in the
Museum of Modern Art of New York, overstrained bicycle wheels, released bilayered …

Effects of chain stiffness on conformational and dynamical properties of individual ring polymers in shear flow

W Chen, J Chen, L Liu, X Xu, L An - Macromolecules, 2013 - ACS Publications
Individual semiflexible ring polymers in a steady shear flow are studied by the multiparticle
collision dynamics method combined with molecular dynamics simulations. We report the …

Conformation of ring polymers in 2D constrained environments

G Witz, K Rechendorff, J Adamcik, G Dietler - Physical review letters, 2011 - APS
The combination of ring closure and spatial constraints has a fundamental effect on the
statistics of semiflexible polymers such as DNA. However, studies of the interplay between …

Confinement‐Induced Ordering and Self‐Folding of Cellulose Nanofibrils

KB Smith, JN Tisserant, S Assenza, M Arcari… - Advanced …, 2019 - Wiley Online Library
Cellulose is a pervasive polymer, displaying hierarchical lengthscales and exceptional
strength and stiffness. Cellulose's complex organization, however, also hinders the detailed …

Temperature and Viscosity Tune the Intermediates during the Collapse of a Polymer

S Majumder, H Christiansen, W Janke - Macromolecules, 2024 - ACS Publications
Dynamics of a polymer chain in solution gets significantly affected by the temperature and
frictional forces arising due to viscosity of the solvent. Here, using an explicit solvent …