Circadian clock, cell division, and cancer: from molecules to organism

A Shostak - International journal of molecular sciences, 2017 - mdpi.com
As a response to environmental changes driven by the Earth's axial rotation, most organisms
evolved an internal biological timer—the so called circadian clock—which regulates …

Apoptotic signaling: Beyond cell death

M Nano, DJ Montell - Seminars in Cell & Developmental Biology, 2024 - Elsevier
Apoptosis is the best described form of regulated cell death, and was, until relatively
recently, considered irreversible once particular biochemical points-of-no-return were …

Optimal stochastic restart renders fluctuations in first passage times universal

S Reuveni - Physical review letters, 2016 - APS
Stochastic restart may drastically reduce the expected run time of a computer algorithm,
expedite the completion of a complex search process, or increase the turnover rate of an …

Analytical distributions for detailed models of stochastic gene expression in eukaryotic cells

Z Cao, R Grima - Proceedings of the National Academy of Sciences, 2020 - pnas.org
The stochasticity of gene expression presents significant challenges to the modeling of
genetic networks. A two-state model describing promoter switching, transcription, and …

Endogenous replication stress in mother cells leads to quiescence of daughter cells

M Arora, J Moser, H Phadke, AA Basha, SL Spencer - Cell reports, 2017 - cell.com
Mammalian cells have two fundamentally different states, proliferative and quiescent, but our
understanding of how and why cells switch between these states is limited. We previously …

Orchestration of DNA damage checkpoint dynamics across the human cell cycle

HX Chao, CE Poovey, AA Privette, GD Grant, HY Chao… - Cell systems, 2017 - cell.com
Although molecular mechanisms that prompt cell-cycle arrest in response to DNA damage
have been elucidated, the systems-level properties of DNA damage checkpoints are not …

High-throughput measurement of single-cell growth rates using serial microfluidic mass sensor arrays

N Cermak, S Olcum, FF Delgado, SC Wasserman… - Nature …, 2016 - nature.com
Methods to rapidly assess cell growth would be useful for many applications, including drug
susceptibility testing, but current technologies have limited sensitivity or throughput. Here we …

High-throughput 3D tracking of bacteria on a standard phase contrast microscope

KM Taute, S Gude, SJ Tans, TS Shimizu - Nature communications, 2015 - nature.com
Bacteria employ diverse motility patterns in traversing complex three-dimensional (3D)
natural habitats. 2D microscopy misses crucial features of 3D behaviour, but the applicability …

Automated deep lineage tree analysis using a Bayesian single cell tracking approach

K Ulicna, G Vallardi, G Charras… - Frontiers in Computer …, 2021 - frontiersin.org
Single-cell methods are beginning to reveal the intrinsic heterogeneity in cell populations,
arising from the interplay of deterministic and stochastic processes. However, it remains …

A microfluidic platform enabling single-cell RNA-seq of multigenerational lineages

RJ Kimmerling, G Lee Szeto, JW Li, AS Genshaft… - Nature …, 2016 - nature.com
We introduce a microfluidic platform that enables off-chip single-cell RNA-seq after multi-
generational lineage tracking under controlled culture conditions. We use this platform to …