Calcium-release channels: structure and function of IP3 receptors and ryanodine receptors

KA Woll, F Van Petegem - Physiological Reviews, 2022 - journals.physiology.org
Ca2+-release channels are giant membrane proteins that control the release of Ca2+ from
the endoplasmic and sarcoplasmic reticulum. The two members, ryanodine receptors …

X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in …

CD Putnam, M Hammel, GL Hura… - Quarterly reviews of …, 2007 - cambridge.org
Crystallography supplies unparalleled detail on structural information critical for mechanistic
analyses; however, it is restricted to describing low energy conformations of …

EMAN2: an extensible image processing suite for electron microscopy

G Tang, L Peng, PR Baldwin, DS Mann, W Jiang… - Journal of structural …, 2007 - Elsevier
EMAN is a scientific image processing package with a particular focus on single particle
reconstruction from transmission electron microscopy (TEM) images. It was first released in …

Automated matching of high-and low-resolution structural models

MB Kozin, DI Svergun - Journal of applied crystallography, 2001 - journals.iucr.org
A method is presented for automated best-matching alignment of three-dimensional models
represented by ensembles of points. A normalized spatial discrepancy (NSD) is introduced …

[BOOK][B] Three-dimensional electron microscopy of macromolecular assemblies: visualization of biological molecules in their native state

J Frank - 2006 - books.google.com
Cryoelectron microscopy of biological molecules is among the hottest growth areas in
biophysics and structural biology at present, and Frank is arguably the most distinguished …

Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics

LG Trabuco, E Villa, K Mitra, J Frank, K Schulten - Structure, 2008 - cell.com
A novel method to flexibly fit atomic structures into electron microscopy (EM) maps using
molecular dynamics simulations is presented. The simulations incorporate the EM data as …

LGP2 is a positive regulator of RIG-I–and MDA5-mediated antiviral responses

T Satoh, H Kato, Y Kumagai… - Proceedings of the …, 2010 - National Acad Sciences
RNA virus infection is recognized by retinoic acid-inducible gene (RIG)-I–like receptors
(RLRs), RIG-I, and melanoma differentiation–associated gene 5 (MDA5) in the cytoplasm …

RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions

B Wiedenheft, E van Duijn… - Proceedings of the …, 2011 - National Acad Sciences
Prokaryotes have evolved multiple versions of an RNA-guided adaptive immune system that
targets foreign nucleic acids. In each case, transcripts derived from clustered regularly …

Structural basis for CRISPR RNA-guided DNA recognition by Cascade

MM Jore, M Lundgren, E Van Duijn… - Nature structural & …, 2011 - nature.com
The CRISPR (clustered regularly interspaced short palindromic repeats) immune system in
prokaryotes uses small guide RNAs to neutralize invading viruses and plasmids. In …

Plant UVR8 photoreceptor senses UV-B by tryptophan-mediated disruption of cross-dimer salt bridges

JM Christie, AS Arvai, KJ Baxter, M Heilmann, AJ Pratt… - Science, 2012 - science.org
The recently identified plant photoreceptor UVR8 (UV RESISTANCE LOCUS 8) triggers
regulatory changes in gene expression in response to ultraviolet-B (UV-B) light through an …