Graph representation learning in biomedicine and healthcare
Networks—or graphs—are universal descriptors of systems of interacting elements. In
biomedicine and healthcare, they can represent, for example, molecular interactions …
biomedicine and healthcare, they can represent, for example, molecular interactions …
Graph neural networks for materials science and chemistry
Abstract Machine learning plays an increasingly important role in many areas of chemistry
and materials science, being used to predict materials properties, accelerate simulations …
and materials science, being used to predict materials properties, accelerate simulations …
Deep learning in drug discovery: an integrative review and future challenges
Recently, using artificial intelligence (AI) in drug discovery has received much attention
since it significantly shortens the time and cost of develo** new drugs. Deep learning (DL) …
since it significantly shortens the time and cost of develo** new drugs. Deep learning (DL) …
Machine learning for high-entropy alloys: Progress, challenges and opportunities
High-entropy alloys (HEAs) have attracted extensive interest due to their exceptional
mechanical properties and the vast compositional space for new HEAs. However …
mechanical properties and the vast compositional space for new HEAs. However …
Could graph neural networks learn better molecular representation for drug discovery? A comparison study of descriptor-based and graph-based models
Graph neural networks (GNN) has been considered as an attractive modelling method for
molecular property prediction, and numerous studies have shown that GNN could yield …
molecular property prediction, and numerous studies have shown that GNN could yield …
Graph neural networks and their current applications in bioinformatics
XM Zhang, L Liang, L Liu, MJ Tang - Frontiers in genetics, 2021 - frontiersin.org
Graph neural networks (GNNs), as a branch of deep learning in non-Euclidean space,
perform particularly well in various tasks that process graph structure data. With the rapid …
perform particularly well in various tasks that process graph structure data. With the rapid …
Interactiongraphnet: A novel and efficient deep graph representation learning framework for accurate protein–ligand interaction predictions
Accurate quantification of protein–ligand interactions remains a key challenge to structure-
based drug design. However, traditional machine learning (ML)-based methods based on …
based drug design. However, traditional machine learning (ML)-based methods based on …
[HTML][HTML] A review on machine learning approaches and trends in drug discovery
P Carracedo-Reboredo, J Liñares-Blanco… - Computational and …, 2021 - Elsevier
Drug discovery aims at finding new compounds with specific chemical properties for the
treatment of diseases. In the last years, the approach used in this search presents an …
treatment of diseases. In the last years, the approach used in this search presents an …
GraphDTA: predicting drug–target binding affinity with graph neural networks
The development of new drugs is costly, time consuming and often accompanied with safety
issues. Drug repurposing can avoid the expensive and lengthy process of drug development …
issues. Drug repurposing can avoid the expensive and lengthy process of drug development …
Advances in de novo drug design: from conventional to machine learning methods
De novo drug design is a computational approach that generates novel molecular structures
from atomic building blocks with no a priori relationships. Conventional methods include …
from atomic building blocks with no a priori relationships. Conventional methods include …