Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Certifying algorithms

RM McConnell, K Mehlhorn, S Näher… - Computer Science …, 2011 - Elsevier
A certifying algorithm is an algorithm that produces, with each output, a certificate or witness
(easy-to-verify proof) that the particular output has not been compromised by a bug. A user …

Pregel: a system for large-scale graph processing

G Malewicz, MH Austern, AJC Bik, JC Dehnert… - Proceedings of the …, 2010 - dl.acm.org
Many practical computing problems concern large graphs. Standard examples include the
Web graph and various social networks. The scale of these graphs-in some cases billions of …

[KİTAP][B] Introduction to algorithms

TH Cormen, CE Leiserson, RL Rivest, C Stein - 2022 - books.google.com
A comprehensive update of the leading algorithms text, with new material on matchings in
bipartite graphs, online algorithms, machine learning, and other topics. Some books on …

A faster algorithm for betweenness centrality

U Brandes - Journal of mathematical sociology, 2001 - Taylor & Francis
Motivated by the fast‐growing need to compute centrality indices on large, yet very sparse,
networks, new algorithms for betweenness are introduced in this paper. They require O (n+ …

[KİTAP][B] The algorithm design manual

SS Skiena - 1998 - Springer
This newly expanded and updated second edition of the best-selling classic continues to
take the" mystery" out of designing algorithms, and analyzing their efficacy and efficiency …

[ALINTI][C] Computational geometry in C

J O'Rourke - 1998 - books.google.com
This is the newly revised and expanded edition of the popular introduction to the design and
implementation of geometry algorithms arising in areas such as computer graphics, robotics …

Cuckoo hashing

R Pagh, FF Rodler - Journal of Algorithms, 2004 - Elsevier
We present a simple dictionary with worst case constant lookup time, equaling the
theoretical performance of the classic dynamic perfect hashing scheme of Dietzfelbinger et …

An open graph visualization system and its applications to software engineering

ER Gansner, SC North - Software: practice and experience, 2000 - Wiley Online Library
We describe a package of practical tools and libraries for manipulating graphs and their
drawings. Our design, which is aimed at facilitating the combination of the package …

Topological analysis and interactive visualization of biological networks and protein structures

NT Doncheva, Y Assenov, FS Domingues… - Nature protocols, 2012 - nature.com
Computational analysis and interactive visualization of biological networks and protein
structures are common tasks for gaining insight into biological processes. This protocol …