Cross-linking mass spectrometry for investigating protein conformations and protein–protein Interactions─ A method for all seasons

L Piersimoni, PL Kastritis, C Arlt, A Sinz - Chemical Reviews, 2021 - ACS Publications
Mass spectrometry (MS) has become one of the key technologies of structural biology. In this
review, the contributions of chemical cross-linking combined with mass spectrometry (XL …

Mass spectrometry‐based protein–protein interaction networks for the study of human diseases

AL Richards, M Eckhardt, NJ Krogan - Molecular systems biology, 2021 - embopress.org
A better understanding of the molecular mechanisms underlying disease is key for
expediting the development of novel therapeutic interventions. Disease mechanisms are …

A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides

ZL Chen, JM Meng, Y Cao, JL Yin, RQ Fang… - Nature …, 2019 - nature.com
We describe pLink 2, a search engine with higher speed and reliability for proteome-scale
identification of cross-linked peptides. With a two-stage open search strategy facilitated by …

Cross-linking mass spectrometry (XL-MS): an emerging technology for interactomics and structural biology

C Yu, L Huang - Analytical chemistry, 2017 - pmc.ncbi.nlm.nih.gov
Protein-protein interactions are fundamental to the formation of intricate interaction networks
and the assembly of multisubunit protein complexes that represent the functional …

Developments and recent advancements in the field of endogenous amino acid selective bond forming reactions for bioconjugation

O Koniev, A Wagner - Chemical Society Reviews, 2015 - pubs.rsc.org
Bioconjugation methodologies have proven to play a central enabling role in the recent
development of biotherapeutics and chemical biology approaches. Recent endeavours in …

A cross-linking/mass spectrometry workflow based on MS-cleavable cross-linkers and the MeroX software for studying protein structures and protein–protein …

C Iacobucci, M Götze, CH Ihling, C Piotrowski, C Arlt… - Nature protocols, 2018 - nature.com
Chemical cross-linking in combination with mass spectrometric analysis of the created cross-
linked products is an emerging technology aimed at deriving valuable structural information …

Efficient and robust proteome-wide approaches for cross-linking mass spectrometry

O Klykov, B Steigenberger, S Pektaş, D Fasci… - Nature protocols, 2018 - nature.com
Cross-linking mass spectrometry (XL-MS) has received considerable interest, owing to its
potential to investigate protein–protein interactions (PPIs) in an unbiased fashion in complex …

Cross‐linking/mass spectrometry for studying protein structures and protein–protein interactions: where are we now and where should we go from here?

A Sinz - Angewandte Chemie International Edition, 2018 - Wiley Online Library
Structural mass spectrometry (MS) is gaining increasing importance for deriving valuable
three‐dimensional structural information on proteins and protein complexes, and it …

[HTML][HTML] The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

J Rappsilber - Journal of structural biology, 2011 - Elsevier
After more than a decade of method development, cross-linking in combination with mass
spectrometry and bioinformatics is finally coming of age. This technology now provides …

Analysis of protein complexes using mass spectrometry

AC Gingras, M Gstaiger, B Raught… - Nature reviews Molecular …, 2007 - nature.com
The versatile combination of affinity purification and mass spectrometry (AP–MS) has
recently been applied to the detailed characterization of many protein complexes and large …