AIPs-SnTCN: Predicting anti-inflammatory peptides using fastText and transformer encoder-based hybrid word embedding with self-normalized temporal …

A Raza, J Uddin, A Almuhaimeed, S Akbar… - Journal of chemical …, 2023‏ - ACS Publications
Inflammation is a biologically resistant response to harmful stimuli, such as infection,
damaged cells, toxic chemicals, or tissue injuries. Its purpose is to eradicate pathogenic …

PAtbP-EnC: Identifying anti-tubercular peptides using multi-feature representation and genetic algorithm-based deep ensemble model

S Akbar, A Raza, T Al Shloul, A Ahmad, A Saeed… - IEEE …, 2023‏ - ieeexplore.ieee.org
Mycobacterium tuberculosis, a highly perilous pathogen in humans, serves as the causative
agent of tuberculosis (TB), affecting nearly 33% of the global population. With the increasing …

StackedEnC-AOP: prediction of antioxidant proteins using transform evolutionary and sequential features based multi-scale vector with stacked ensemble learning

G Rukh, S Akbar, G Rehman, FK Alarfaj, Q Zou - BMC bioinformatics, 2024‏ - Springer
Background Antioxidant proteins are involved in several biological processes and can
protect DNA and cells from the damage of free radicals. These proteins regulate the body's …

Machine learning-based model for accurate identification of druggable proteins using light extreme gradient boosting

O Alghushairy, F Ali, W Alghamdi, M Khalid… - Journal of …, 2024‏ - Taylor & Francis
The identification of druggable proteins (DPs) is significant for the development of new
drugs, personalized medicine, understanding of disease mechanisms, drug repurposing …

Deepstacked-AVPs: predicting antiviral peptides using tri-segment evolutionary profile and word embedding based multi-perspective features with deep stacking …

S Akbar, A Raza, Q Zou - BMC bioinformatics, 2024‏ - Springer
Background Viral infections have been the main health issue in the last decade. Antiviral
peptides (AVPs) are a subclass of antimicrobial peptides (AMPs) with substantial potential to …

DeepAIPs-Pred: predicting anti-inflammatory peptides using local evolutionary transformation images and structural embedding-based optimal descriptors with Self …

S Akbar, M Ullah, A Raza, Q Zou… - Journal of Chemical …, 2024‏ - ACS Publications
Inflammation is a biological response to harmful stimuli, playing a crucial role in facilitating
tissue repair by eradicating pathogenic microorganisms. However, when inflammation …

Exploring Integration of Multimodal Deep Learning Approaches for Enhanced Alzheimer's Disease Diagnosis: A Review of Recent Literature

S Deshpande, N Kulkarni - SN Computer Science, 2024‏ - Springer
Abstract Alzheimer's disease (AD), is the most common form of dementia that affects the
nervous system. In the past few years, non-invasive early AD diagnosis has become more …

Comprehensive Analysis of Computational Models for Prediction of Anticancer Peptides Using Machine Learning and Deep Learning

F Ali, N Ibrahim, R Alsini, A Masmoudi… - … Methods in Engineering, 2025‏ - Springer
Anti-cancer peptides (ACPs) represent promising candidates for cancer therapy because
they can target cancer cells selectively while leaving healthy cells unaffected. ACPs offer a …

A bi-layer model for identification of piwiRNA using deep neural learning

A Adnan, W Hongya, F Ali, M Khalid… - Journal of …, 2024‏ - Taylor & Francis
Abstract piwiRNA is a kind of non-coding RNA (ncRNA) that cannot be translated into
proteins. It helps in understanding the study of gametes generation and regulation of gene …

AE-Net: Novel Autoencoder-Based Deep Features for SQL Injection Attack Detection

N Thalji, A Raza, MS Islam, NA Samee… - IEEE …, 2023‏ - ieeexplore.ieee.org
Structured Query Language (SQL) injection attacks represent a critical threat to database-
driven applications and systems, exploiting vulnerabilities in input fields to inject malicious …