Graph neural networks and their current applications in bioinformatics
XM Zhang, L Liang, L Liu, MJ Tang - Frontiers in genetics, 2021 - frontiersin.org
Graph neural networks (GNNs), as a branch of deep learning in non-Euclidean space,
perform particularly well in various tasks that process graph structure data. With the rapid …
perform particularly well in various tasks that process graph structure data. With the rapid …
[HTML][HTML] Graph neural networks: A review of methods and applications
Lots of learning tasks require dealing with graph data which contains rich relation
information among elements. Modeling physics systems, learning molecular fingerprints …
information among elements. Modeling physics systems, learning molecular fingerprints …
Deepgcns: Can gcns go as deep as cnns?
Abstract Convolutional Neural Networks (CNNs) achieve impressive performance in a wide
variety of fields. Their success benefited from a massive boost when very deep CNN models …
variety of fields. Their success benefited from a massive boost when very deep CNN models …
Entity, relation, and event extraction with contextualized span representations
We examine the capabilities of a unified, multi-task framework for three information
extraction tasks: named entity recognition, relation extraction, and event extraction. Our …
extraction tasks: named entity recognition, relation extraction, and event extraction. Our …
A survey of graph neural networks for social recommender systems
Social recommender systems (SocialRS) simultaneously leverage the user-to-item
interactions as well as the user-to-user social relations for the task of generating item …
interactions as well as the user-to-user social relations for the task of generating item …
A deep-learning system bridging molecule structure and biomedical text with comprehension comparable to human professionals
To accelerate biomedical research process, deep-learning systems are developed to
automatically acquire knowledge about molecule entities by reading large-scale biomedical …
automatically acquire knowledge about molecule entities by reading large-scale biomedical …
Attention guided graph convolutional networks for relation extraction
Dependency trees convey rich structural information that is proven useful for extracting
relations among entities in text. However, how to effectively make use of relevant information …
relations among entities in text. However, how to effectively make use of relevant information …
DocRED: A large-scale document-level relation extraction dataset
Multiple entities in a document generally exhibit complex inter-sentence relations, and
cannot be well handled by existing relation extraction (RE) methods that typically focus on …
cannot be well handled by existing relation extraction (RE) methods that typically focus on …
Two are better than one: Joint entity and relation extraction with table-sequence encoders
Named entity recognition and relation extraction are two important fundamental problems.
Joint learning algorithms have been proposed to solve both tasks simultaneously, and many …
Joint learning algorithms have been proposed to solve both tasks simultaneously, and many …
Multi-task identification of entities, relations, and coreference for scientific knowledge graph construction
We introduce a multi-task setup of identifying and classifying entities, relations, and
coreference clusters in scientific articles. We create SciERC, a dataset that includes …
coreference clusters in scientific articles. We create SciERC, a dataset that includes …