[HTML][HTML] Environmental DNA–An emerging tool in conservation for monitoring past and present biodiversity
The continuous decline in Earth's biodiversity represents a major crisis and challenge for the
21st century, and there is international political agreement to slow down or halt this decline …
21st century, and there is international political agreement to slow down or halt this decline …
Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide
Novel high‐throughput sequencing methods outperform earlier approaches in terms of
resolution and magnitude. They enable identification and relative quantification of …
resolution and magnitude. They enable identification and relative quantification of …
Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing …
The nuclear ribosomal internal transcribed spacer (ITS) region is the primary choice for
molecular identification of fungi. Its two highly variable spacers (ITS 1 and ITS 2) are usually …
molecular identification of fungi. Its two highly variable spacers (ITS 1 and ITS 2) are usually …
[PDF][PDF] Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi
Rapid development of high-throughput (HTS) molecular identification methods has
revolutionized our knowledge about taxonomic diversity and ecology of fungi. However …
revolutionized our knowledge about taxonomic diversity and ecology of fungi. However …
The sooty moulds
Sooty moulds are a remarkable, but poorly understood group of fungi. They coat fruits and
leaves superficially with black mycelia, which reduces photosynthesis rates of host plants …
leaves superficially with black mycelia, which reduces photosynthesis rates of host plants …
Comparison and validation of some ITS primer pairs useful for fungal metabarcoding studies
Current metabarcoding studies aiming to characterize microbial communities generally rely
on the amplification and sequencing of relatively short DNA regions. For fungi, the internal …
on the amplification and sequencing of relatively short DNA regions. For fungi, the internal …
Estimating and mitigating amplification bias in qualitative and quantitative arthropod metabarcoding
Amplicon based metabarcoding promises rapid and cost-efficient analyses of species
composition. However, it is disputed whether abundance estimates can be derived from …
composition. However, it is disputed whether abundance estimates can be derived from …
Forgotten fungi—the gut mycobiome in human health and disease
The human body is home to a complex and diverse microbial ecosystem that plays a central
role in host health. This includes a diversity of fungal species that is collectively referred to …
role in host health. This includes a diversity of fungal species that is collectively referred to …
The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)
Here, we describe a new database, MaarjAM, that summarizes publicly available
Glomeromycota DNA sequence data and associated metadata. The goal of the database is …
Glomeromycota DNA sequence data and associated metadata. The goal of the database is …
454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
Soil fungi play a major role in ecological and biogeochemical processes in forests. Little is
known, however, about the structure and richness of different fungal communities and the …
known, however, about the structure and richness of different fungal communities and the …