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Macromolecular modeling and design in Rosetta: recent methods and frameworks
The Rosetta software for macromolecular modeling, docking and design is extensively used
in laboratories worldwide. During two decades of development by a community of …
in laboratories worldwide. During two decades of development by a community of …
Autonomous discovery in the chemical sciences part I: Progress
This two‐part Review examines how automation has contributed to different aspects of
discovery in the chemical sciences. In this first part, we describe a classification for …
discovery in the chemical sciences. In this first part, we describe a classification for …
Artificial intelligence, values, and alignment
I Gabriel - Minds and machines, 2020 - Springer
This paper looks at philosophical questions that arise in the context of AI alignment. It
defends three propositions. First, normative and technical aspects of the AI alignment …
defends three propositions. First, normative and technical aspects of the AI alignment …
Error estimates for deeponets: A deep learning framework in infinite dimensions
DeepONets have recently been proposed as a framework for learning nonlinear operators
map** between infinite-dimensional Banach spaces. We analyze DeepONets and prove …
map** between infinite-dimensional Banach spaces. We analyze DeepONets and prove …
MAFFT-DASH: integrated protein sequence and structural alignment
Here, we describe a web server that integrates structural alignments with the MAFFT
multiple sequence alignment (MSA) tool. For this purpose, we have prepared a web-based …
multiple sequence alignment (MSA) tool. For this purpose, we have prepared a web-based …
Improved protein structure prediction using predicted interresidue orientations
The prediction of interresidue contacts and distances from coevolutionary data using deep
learning has considerably advanced protein structure prediction. Here, we build on these …
learning has considerably advanced protein structure prediction. Here, we build on these …
Modeling aspects of the language of life through transfer-learning protein sequences
Background Predicting protein function and structure from sequence is one important
challenge for computational biology. For 26 years, most state-of-the-art approaches …
challenge for computational biology. For 26 years, most state-of-the-art approaches …
Estimates on the generalization error of physics-informed neural networks for approximating a class of inverse problems for PDEs
Physics-informed neural networks (PINNs) have recently been very successfully applied for
efficiently approximating inverse problems for partial differential equations (PDEs). We focus …
efficiently approximating inverse problems for partial differential equations (PDEs). We focus …
Machine learning in enzyme engineering
Enzyme engineering plays a central role in develo** efficient biocatalysts for
biotechnology, biomedicine, and life sciences. Apart from classical rational design and …
biotechnology, biomedicine, and life sciences. Apart from classical rational design and …
Estimates on the generalization error of physics-informed neural networks for approximating PDEs
Physics-informed neural networks (PINNs) have recently been widely used for robust and
accurate approximation of partial differential equations (PDEs). We provide upper bounds …
accurate approximation of partial differential equations (PDEs). We provide upper bounds …