The K = 2 conundrum

JK Janes, JM Miller, JR Dupuis… - Molecular …, 2017 - Wiley Online Library
Assessments of population genetic structure have become an increasing focus as they can
provide valuable insight into patterns of migration and gene flow. structure, the most highly …

A tutorial on statistical methods for population association studies

DJ Balding - Nature reviews genetics, 2006 - nature.com
Although genetic association studies have been with us for many years, even for the
simplest analyses there is little consensus on the most appropriate statistical procedures …

Clumpak: a program for identifying clustering modes and packaging population structure inferences across K

NM Kopelman, J Mayzel, M Jakobsson… - Molecular ecology …, 2015 - Wiley Online Library
The identification of the genetic structure of populations from multilocus genotype data has
become a central component of modern population‐genetic data analysis. Application of …

SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans

RL Lamason, MAPK Mohideen, JR Mest, AC Wong… - Science, 2005 - science.org
Lighter variations of pigmentation in humans are associated with diminished number, size,
and density of melanosomes, the pigmented organelles of melanocytes. Here we show that …

Genetics of osteoporosis

SH Ralston, AG Uitterlinden - Endocrine reviews, 2010 - academic.oup.com
Osteoporosis is a common disease with a strong genetic component characterized by
reduced bone mass, defects in the microarchitecture of bone tissue, and an increased risk of …

Genome-wide association studies: theoretical and practical concerns

WYS Wang, BJ Barratt, DG Clayton… - Nature Reviews Genetics, 2005 - nature.com
To fully understand the allelic variation that underlies common diseases, complete genome
sequencing for many individuals with and without disease is required. This is still not …

The effects of human population structure on large genetic association studies

J Marchini, LR Cardon, MS Phillips, P Donnelly - Nature genetics, 2004 - nature.com
Large-scale association studies hold substantial promise for unraveling the genetic basis of
common human diseases. A well-known problem with such studies is the presence of …

Assessing the impact of population stratification on genetic association studies

ML Freedman, D Reich, KL Penney, GJ McDonald… - Nature …, 2004 - nature.com
Population stratification refers to differences in allele frequencies between cases and
controls due to systematic differences in ancestry rather than association of genes with …

Informativeness of genetic markers for inference of ancestry

NA Rosenberg, LM Li, R Ward, JK Pritchard - The American Journal of …, 2003 - cell.com
Inference of individual ancestry is useful in various applications, such as admixture map**
and structured-association map**. Using information-theoretic principles, we introduce a …

Population structure and cryptic relatedness in genetic association studies

W Astle, DJ Balding - 2009 - projecteuclid.org
We review the problem of confounding in genetic association studies, which arises
principally because of population structure and cryptic relatedness. Many treatments of the …