Indexing highly repetitive string collections, part II: compressed indexes

G Navarro - ACM Computing Surveys (CSUR), 2021 - dl.acm.org
Two decades ago, a breakthrough in indexing string collections made it possible to
represent them within their compressed space while at the same time offering indexed …

[Књига][B] Compact data structures: A practical approach

G Navarro - 2016 - books.google.com
Compact data structures help represent data in reduced space while allowing it to be
queried, navigated, and operated in compressed form. They are essential tools for efficiently …

[HTML][HTML] Wavelet trees for all

G Navarro - Journal of Discrete Algorithms, 2014 - Elsevier
The wavelet tree is a versatile data structure that serves a number of purposes, from string
processing to computational geometry. It can be regarded as a device that represents a …

Range searching

PK Agarwal - Handbook of discrete and computational geometry, 2017 - taylorfrancis.com
A central problem in computational geometry, range searching arises in many applications,
and a variety of geometric problems can be formulated as range-searching problems. A …

Predecessor search

G Navarro, J Rojas-Ledesma - ACM Computing Surveys (CSUR), 2020 - dl.acm.org
The predecessor problem is a key component of the fundamental sorting-and-searching
core of algorithmic problems. While binary search is the optimal solution in the comparison …

GPTune: Multitask learning for autotuning exascale applications

Y Liu, WM Sid-Lakhdar, O Marques, X Zhu… - Proceedings of the 26th …, 2021 - dl.acm.org
Multitask learning has proven to be useful in the field of machine learning when additional
knowledge is available to help a prediction task. We adapt this paradigm to develop …

Optimal-time dictionary-compressed indexes

AR Christiansen, MB Ettienne, T Kociumaka… - ACM Transactions on …, 2020 - dl.acm.org
We describe the first self-indexes able to count and locate pattern occurrences in optimal
time within a space bounded by the size of the most popular dictionary compressors. To …

A faster grammar-based self-index

T Gagie, P Gawrychowski, J Kärkkäinen… - … on Language and …, 2012 - Springer
To store and search genomic databases efficiently, researchers have recently started
building compressed self-indexes based on straight-line programs and LZ77. In this paper …

Functional aggregate queries with additive inequalities

MA Khamis, RR Curtin, B Moseley, HQ Ngo… - ACM Transactions on …, 2020 - dl.acm.org
Motivated by fundamental applications in databases and relational machine learning, we
formulate and study the problem of answering functional aggregate queries (FAQ) in which …

LZ77-based self-indexing with faster pattern matching

T Gagie, P Gawrychowski, J Kärkkäinen… - Latin American …, 2014 - Springer
To store and search genomic databases efficiently, researchers have recently started
building self-indexes based on LZ77. As the name suggests, a self-index for a string …