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Indexing highly repetitive string collections, part II: compressed indexes
G Navarro - ACM Computing Surveys (CSUR), 2021 - dl.acm.org
Two decades ago, a breakthrough in indexing string collections made it possible to
represent them within their compressed space while at the same time offering indexed …
represent them within their compressed space while at the same time offering indexed …
[Књига][B] Compact data structures: A practical approach
G Navarro - 2016 - books.google.com
Compact data structures help represent data in reduced space while allowing it to be
queried, navigated, and operated in compressed form. They are essential tools for efficiently …
queried, navigated, and operated in compressed form. They are essential tools for efficiently …
[HTML][HTML] Wavelet trees for all
G Navarro - Journal of Discrete Algorithms, 2014 - Elsevier
The wavelet tree is a versatile data structure that serves a number of purposes, from string
processing to computational geometry. It can be regarded as a device that represents a …
processing to computational geometry. It can be regarded as a device that represents a …
Range searching
PK Agarwal - Handbook of discrete and computational geometry, 2017 - taylorfrancis.com
A central problem in computational geometry, range searching arises in many applications,
and a variety of geometric problems can be formulated as range-searching problems. A …
and a variety of geometric problems can be formulated as range-searching problems. A …
Predecessor search
The predecessor problem is a key component of the fundamental sorting-and-searching
core of algorithmic problems. While binary search is the optimal solution in the comparison …
core of algorithmic problems. While binary search is the optimal solution in the comparison …
GPTune: Multitask learning for autotuning exascale applications
Multitask learning has proven to be useful in the field of machine learning when additional
knowledge is available to help a prediction task. We adapt this paradigm to develop …
knowledge is available to help a prediction task. We adapt this paradigm to develop …
Optimal-time dictionary-compressed indexes
We describe the first self-indexes able to count and locate pattern occurrences in optimal
time within a space bounded by the size of the most popular dictionary compressors. To …
time within a space bounded by the size of the most popular dictionary compressors. To …
A faster grammar-based self-index
To store and search genomic databases efficiently, researchers have recently started
building compressed self-indexes based on straight-line programs and LZ77. In this paper …
building compressed self-indexes based on straight-line programs and LZ77. In this paper …
Functional aggregate queries with additive inequalities
Motivated by fundamental applications in databases and relational machine learning, we
formulate and study the problem of answering functional aggregate queries (FAQ) in which …
formulate and study the problem of answering functional aggregate queries (FAQ) in which …
LZ77-based self-indexing with faster pattern matching
To store and search genomic databases efficiently, researchers have recently started
building self-indexes based on LZ77. As the name suggests, a self-index for a string …
building self-indexes based on LZ77. As the name suggests, a self-index for a string …