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Semiempirical quantum–chemical methods
W Thiel - Wiley Interdisciplinary Reviews: Computational …, 2014 - Wiley Online Library
The semiempirical methods of quantum chemistry are reviewed, with emphasis on
established neglect of diatomic differential overlap‐based methods (MNDO, AM 1, PM 3) …
established neglect of diatomic differential overlap‐based methods (MNDO, AM 1, PM 3) …
Molecular modeling of organic and biomolecular systems using BOSS and MCPRO
An overview is provided of the capabilities for the current versions of the BOSS and MCPRO
programs for molecular modeling of organic and biomolecular systems. Recent applications …
programs for molecular modeling of organic and biomolecular systems. Recent applications …
Performance of B3LYP density functional methods for a large set of organic molecules
Testing of the commonly used hybrid density functional B3LYP with the 6-31G (d), 6-31G (d,
p), and 6-31+ G (d, p) basis sets has been carried out for 622 neutral, closed-shell organic …
p), and 6-31+ G (d, p) basis sets has been carried out for 622 neutral, closed-shell organic …
The DBH24/08 database and its use to assess electronic structure model chemistries for chemical reaction barrier heights
The diverse barrier height database DBH24 is updated by using W4 and W3. 2 data (Karton,
A.; Tarnopolsky, A.; Lamère, J.-F.; Schatz, GC; Martin, JMLJ Phys. Chem. A 2008, 112 …
A.; Tarnopolsky, A.; Lamère, J.-F.; Schatz, GC; Martin, JMLJ Phys. Chem. A 2008, 112 …
Mechanisms and free energies of enzymatic reactions
Most enzymatic reactions have very large and remarkably similar apparent second-order
rate constants, kcat/KM, at mean values of about 107 M-1 s-1 with kcat in the range of 10 …
rate constants, kcat/KM, at mean values of about 107 M-1 s-1 with kcat in the range of 10 …
Semiempirical quantum-chemical orthogonalization-corrected methods: theory, implementation, and parameters
Semiempirical orthogonalization-corrected methods (OM1, OM2, and OM3) go beyond the
standard MNDO model by explicitly including additional interactions into the Fock matrix in …
standard MNDO model by explicitly including additional interactions into the Fock matrix in …
Advances in quantum and molecular mechanical (QM/MM) simulations for organic and enzymatic reactions
Application of combined quantum and molecular mechanical (QM/MM) methods focuses on
predicting activation barriers and the structures of stationary points for organic and …
predicting activation barriers and the structures of stationary points for organic and …
The origins of femtomolar protein− ligand binding: hydrogen-bond cooperativity and desolvation energetics in the biotin−(strept) avidin binding site
J DeChancie, KN Houk - Journal of the American Chemical …, 2007 - ACS Publications
The unusually strong reversible binding of biotin by avidin and streptavidin has been
investigated by density functional and MP2 ab initio quantum mechanical methods. The …
investigated by density functional and MP2 ab initio quantum mechanical methods. The …
Representative benchmark suites for barrier heights of diverse reaction types and assessment of electronic structure methods for thermochemical kinetics
We propose three small sets of barrier heights for heavy-atom transfer, nucleophilic
substitution, and unimolecular and association reactions as benchmarks for comparing and …
substitution, and unimolecular and association reactions as benchmarks for comparing and …
Semiempirical quantum-chemical methods with orthogonalization and dispersion corrections
We present two new semiempirical quantum-chemical methods with orthogonalization and
dispersion corrections: ODM2 and ODM3 (ODM x). They employ the same electronic …
dispersion corrections: ODM2 and ODM3 (ODM x). They employ the same electronic …