Stochastic models of intracellular transport

PC Bressloff, JM Newby - Reviews of Modern Physics, 2013 - APS
The interior of a living cell is a crowded, heterogenuous, fluctuating environment. Hence, a
major challenge in modeling intracellular transport is to analyze stochastic processes within …

Solid-state nanopores

C Dekker - Nature nanotechnology, 2007 - nature.com
The passage of individual molecules through nanosized pores in membranes is central to
many processes in biology. Previously, experiments have been restricted to naturally …

[Књига][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

Artificial Brownian motors: Controlling transport on the nanoscale

P Hänggi, F Marchesoni - Reviews of Modern Physics, 2009 - APS
In systems possessing spatial or dynamical symmetry breaking, Brownian motion combined
with unbiased external input signals, deterministic and random alike, can assist directed …

Single-molecule experiments in biological physics: methods and applications

F Ritort - Journal of Physics: Condensed Matter, 2006 - iopscience.iop.org
I review single-molecule experiments (SMEs) in biological physics. Recent technological
developments have provided the tools to design and build scientific instruments of high …

Polymer translocation: the first two decades and the recent diversification

VV Palyulin, T Ala-Nissila, R Metzler - Soft matter, 2014 - pubs.rsc.org
Probably no other field of statistical physics at the borderline of soft matter and biological
physics has caused such a flurry of papers as polymer translocation since the 1994 …

Single-polymer dynamics under constraints: scaling theory and computer experiment

A Milchev - Journal of Physics: Condensed Matter, 2011 - iopscience.iop.org
The relaxation, diffusion and translocation dynamics of single linear polymer chains in
confinement is briefly reviewed with emphasis on the comparison between theoretical …

Controlling nanopore size, shape and stability

M Van den Hout, AR Hall, MY Wu… - …, 2010 - iopscience.iop.org
Solid-state nanopores are considered a promising tool for the study of biological polymers
such as DNA and RNA, due largely to their flexibility in size, potential in device integration …

Biased diffusion in confined media: Test of the Fick-Jacobs approximation and validity criteria

PS Burada, G Schmid, D Reguera, JM Rubi… - Physical Review E …, 2007 - APS
We study biased, diffusive transport of Brownian particles through narrow, spatially periodic
structures in which the motion is constrained in lateral directions. The problem is analyzed …

Optical tweezers for force measurements on DNA in nanopores

UF Keyser, J Van der Does, C Dekker… - Review of Scientific …, 2006 - pubs.aip.org
We demonstrate the means to integrate two powerful and widely used single-molecule
techniques, viz., optical tweezers and solid-state nanopores. This setup permits …