Current strategies of polyploid plant genome sequence assembly

M Kyriakidou, HH Tai, NL Anglin, D Ellis… - Frontiers in plant …, 2018 - frontiersin.org
Polyploidy or duplication of an entire genome occurs in the majority of angiosperms. The
understanding of polyploid genomes is important for the improvement of those crops, which …

Fine map** and gene cloning in the post-NGS era: advances and prospects

D Jaganathan, A Bohra, M Thudi… - Theoretical and Applied …, 2020 - Springer
Improvement in traits of agronomic importance is the top breeding priority of crop
improvement programs. Majority of these agronomic traits show complex quantitative …

Shifting the limits in wheat research and breeding using a fully annotated reference genome

International Wheat Genome Sequencing Consortium … - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …

A deletion mutation in TaHRC confers Fhb1 resistance to Fusarium head blight in wheat

Z Su, A Bernardo, B Tian, H Chen, S Wang, H Ma… - Nature …, 2019 - nature.com
Fusarium head blight (FHB), which is mainly caused by Fusarium graminearum, is a
destructive wheat disease that threatens global wheat production. Fhb1, a quantitative trait …

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

International Wheat Genome Sequencing Consortium … - Science, 2014 - science.org
An ordered draft sequence of the 17-gigabase hexaploid bread wheat (Triticum aestivum)
genome has been produced by sequencing isolated chromosome arms. We have annotated …

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

SP Gordon, B Contreras-Moreira, DP Woods… - Nature …, 2017 - nature.com
While prokaryotic pan-genomes have been shown to contain many more genes than any
individual organism, the prevalence and functional significance of differentially present …

Analysis of the bread wheat genome using whole-genome shotgun sequencing

R Brenchley, M Spannagl, M Pfeifer, GLA Barker… - Nature, 2012 - nature.com
Bread wheat (Triticum aestivum) is a globally important crop, accounting for 20 per cent of
the calories consumed by humans. Major efforts are underway worldwide to increase wheat …

Impact of transposable elements on genome structure and evolution in bread wheat

T Wicker, H Gundlach, M Spannagl, C Uauy, P Borrill… - Genome biology, 2018 - Springer
Abstract Background Transposable elements (TEs) are major components of large plant
genomes and main drivers of genome evolution. The most recent assembly of hexaploid …

Draft genome of the wheat A-genome progenitor Triticum urartu

HQ Ling, S Zhao, D Liu, J Wang, H Sun, C Zhang… - Nature, 2013 - nature.com
Bread wheat (Triticum aestivum, AABBDD) is one of the most widely cultivated and
consumed food crops in the world. However, the complex polyploid nature of its genome …

Structural and functional partitioning of bread wheat chromosome 3B

F Choulet, A Alberti, S Theil, N Glover, V Barbe… - Science, 2014 - science.org
We produced a reference sequence of the 1-gigabase chromosome 3B of hexaploid bread
wheat. By sequencing 8452 bacterial artificial chromosomes in pools, we assembled a …