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Ultrahigh-Throughput Enzyme Engineering and Discovery in In Vitro Compartments
Novel and improved biocatalysts are increasingly sourced from libraries via experimental
screening. The success of such campaigns is crucially dependent on the number of …
screening. The success of such campaigns is crucially dependent on the number of …
Emerging droplet microfluidics
Droplet microfluidics generates and manipulates discrete droplets through immiscible
multiphase flows inside microchannels. Due to its remarkable advantages, droplet …
multiphase flows inside microchannels. Due to its remarkable advantages, droplet …
Proteingym: Large-scale benchmarks for protein fitness prediction and design
Predicting the effects of mutations in proteins is critical to many applications, from
understanding genetic disease to designing novel proteins to address our most pressing …
understanding genetic disease to designing novel proteins to address our most pressing …
Language models enable zero-shot prediction of the effects of mutations on protein function
Modeling the effect of sequence variation on function is a fundamental problem for
understanding and designing proteins. Since evolution encodes information about function …
understanding and designing proteins. Since evolution encodes information about function …
Self-driving laboratories to autonomously navigate the protein fitness landscape
Protein engineering has nearly limitless applications across chemistry, energy and
medicine, but creating new proteins with improved or novel functions remains slow, labor …
medicine, but creating new proteins with improved or novel functions remains slow, labor …
Mutation effects predicted from sequence co-variation
Many high-throughput experimental technologies have been developed to assess the
effects of large numbers of mutations (variation) on phenotypes. However, designing …
effects of large numbers of mutations (variation) on phenotypes. However, designing …
Advances in ultrahigh-throughput screening for directed enzyme evolution
Enzymes are versatile catalysts and their synthetic potential has been recognized for a long
time. In order to exploit their full potential, enzymes often need to be re-engineered or …
time. In order to exploit their full potential, enzymes often need to be re-engineered or …
Deep generative models of genetic variation capture the effects of mutations
The functions of proteins and RNAs are defined by the collective interactions of many
residues, and yet most statistical models of biological sequences consider sites nearly …
residues, and yet most statistical models of biological sequences consider sites nearly …
MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect
Multiplex assays of variant effect (MAVEs), such as deep mutational scans and massively
parallel reporter assays, test thousands of sequence variants in a single experiment. Despite …
parallel reporter assays, test thousands of sequence variants in a single experiment. Despite …
Network of epistatic interactions in an enzyme active site revealed by large-scale deep mutational scanning
Cooperative interactions between amino acids are critical for protein function. A genetic
reflection of cooperativity is epistasis, which is when a change in the amino acid at one …
reflection of cooperativity is epistasis, which is when a change in the amino acid at one …