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Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
The widespread occurrence of repetitive stretches of DNA in genomes of organisms across
the tree of life imposes fundamental challenges for sequencing, genome assembly, and …
the tree of life imposes fundamental challenges for sequencing, genome assembly, and …
A survey on computational models for predicting protein–protein interactions
Proteins interact with each other to play critical roles in many biological processes in cells.
Although promising, laboratory experiments usually suffer from the disadvantages of being …
Although promising, laboratory experiments usually suffer from the disadvantages of being …
[HTML][HTML] Phages and their satellites encode hotspots of antiviral systems
Bacteria carry diverse genetic systems to defend against viral infection, some of which are
found within prophages where they inhibit competing viruses. Phage satellites pose …
found within prophages where they inhibit competing viruses. Phage satellites pose …
[HTML][HTML] Information fusion as an integrative cross-cutting enabler to achieve robust, explainable, and trustworthy medical artificial intelligence
Medical artificial intelligence (AI) systems have been remarkably successful, even
outperforming human performance at certain tasks. There is no doubt that AI is important to …
outperforming human performance at certain tasks. There is no doubt that AI is important to …
IMG/M v. 5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
Abstract The Integrated Microbial Genomes & Microbiomes system v. 5.0 (IMG/M: https://img.
jgi. doe. gov/m/) contains annotated datasets categorized into: archaea, bacteria, eukarya …
jgi. doe. gov/m/) contains annotated datasets categorized into: archaea, bacteria, eukarya …
IMG/M: integrated genome and metagenome comparative data analysis system
IMA Chen, VM Markowitz, K Chu… - Nucleic acids …, 2016 - academic.oup.com
Abstract The Integrated Microbial Genomes with Microbiome Samples (IMG/M: https://img.
jgi. doe. gov/m/) system contains annotated DNA and RNA sequence data of (i) archaeal …
jgi. doe. gov/m/) system contains annotated DNA and RNA sequence data of (i) archaeal …
Protein‐protein interaction detection: methods and analysis
Protein‐protein interaction plays key role in predicting the protein function of target protein
and drug ability of molecules. The majority of genes and proteins realize resulting …
and drug ability of molecules. The majority of genes and proteins realize resulting …
The STRING database in 2025: protein networks with directionality of regulation
Proteins cooperate, regulate and bind each other to achieve their functions. Understanding
the complex network of their interactions is essential for a systems-level description of …
the complex network of their interactions is essential for a systems-level description of …
Predicting protein–protein interactions from the molecular to the proteome level
Identification of protein–protein interactions (PPIs) is at the center of molecular biology
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …
IMG: the integrated microbial genomes database and comparative analysis system
VM Markowitz, IMA Chen, K Palaniappan… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Integrated Microbial Genomes (IMG) system serves as a community resource
for comparative analysis of publicly available genomes in a comprehensive integrated …
for comparative analysis of publicly available genomes in a comprehensive integrated …