Predicting the effects of amino acid substitutions on protein function

PC Ng, S Henikoff - Annu. Rev. Genomics Hum. Genet., 2006 - annualreviews.org
Nonsynonymous single nucleotide polymorphisms (nsSNPs) are coding variants that
introduce amino acid changes in their corresponding proteins. Because nsSNPs can affect …

Analyzing effects of naturally occurring missense mutations

Z Zhang, MA Miteva, L Wang… - … mathematical methods in …, 2012 - Wiley Online Library
Single‐point mutation in genome, for example, single‐nucleotide polymorphism (SNP) or
rare genetic mutation, is the change of a single nucleotide for another in the genome …

CASTp: computed atlas of surface topography of proteins with structural and topographical map** of functionally annotated residues

J Dundas, Z Ouyang, J Tseng, A Binkowski… - Nucleic acids …, 2006 - academic.oup.com
Cavities on a proteins surface as well as specific amino acid positioning within it create the
physicochemical properties needed for a protein to perform its function. CASTp (http://cast …

SNPs3D: candidate gene and SNP selection for association studies

P Yue, E Melamud, J Moult - BMC bioinformatics, 2006 - Springer
Background The relationship between disease susceptibility and genetic variation is
complex, and many different types of data are relevant. We describe a web resource and …

Many amino acid substitution variants identified in DNA repair genes during human population screenings are predicted to impact protein function

T **, IM Jones, HW Mohrenweiser - Genomics, 2004 - Elsevier
Over 520 different amino acid substitution variants have been previously identified in the
systematic screening of 91 human DNA repair genes for sequence variation. Two algorithms …

LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources

R Karchin, M Diekhans, L Kelly, DJ Thomas… - …, 2005 - academic.oup.com
Abstract Motivation: The NCBI dbSNP database lists over 9 million single nucleotide
polymorphisms (SNPs) in the human genome, but currently contains limited annotation …

[BOK][B] Advances in protein chemistry and structural biology

R Donev - 2024 - books.google.com
Advances in Protein Chemistry and Structural Biology, Volume 138 covers reviews of
methodology and research in all aspects of protein chemistry, including …

Use of long term molecular dynamics simulation in predicting cancer associated SNPs

A Kumar, R Purohit - PLoS computational biology, 2014 - journals.plos.org
Computational prediction of cancer associated SNPs from the large pool of SNP dataset is
now being used as a tool for detecting the probable oncogenes, which are further examined …

Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis

S Mooney - Briefings in bioinformatics, 2005 - academic.oup.com
Since the initial sequencing of the human genome, many projects are underway to
understand the effects of genetic variation between individuals. Predicting and …

Modeling effects of human single nucleotide polymorphisms on protein-protein interactions

S Teng, T Madej, A Panchenko, E Alexov - Biophysical journal, 2009 - cell.com
A large set of three-dimensional structures of 264 protein-protein complexes with known
nonsynonymous single nucleotide polymorphisms (nsSNPs) at the interface was built using …