The role of model checking in software engineering
Abstract Model checking is a formal verification technique. It takes an exhaustively strategy
to check hardware circuits and network protocols against desired properties. Having been …
to check hardware circuits and network protocols against desired properties. Having been …
Complexity of the dynamics of reaction systems
Reaction systems are discrete dynamical systems inspired by bio-chemical processes,
whose dynamical behaviour is expressed by set-theoretic operations on finite sets. Reaction …
whose dynamical behaviour is expressed by set-theoretic operations on finite sets. Reaction …
Reaction systems: a model of computation inspired by the functioning of the living cell
Reaction systems are a model of computation inspired by the functioning of the living cell.
They formalize the interactions between biochemical reactions that form the basic …
They formalize the interactions between biochemical reactions that form the basic …
[HTML][HTML] Fixed points and attractors of reactantless and inhibitorless reaction systems
Reaction systems are discrete dynamical systems that model biochemical processes in
living cells using finite sets of reactants, inhibitors, and products. We investigate the …
living cells using finite sets of reactants, inhibitors, and products. We investigate the …
[HTML][HTML] Steady states of constrained reaction systems
S Azimi - Theoretical Computer Science, 2017 - Elsevier
Reaction systems, a mathematical formalism inspired by the mechanisms within a biological
cell, focuses on an abstract set-based representation of chemical reactions via facilitation …
cell, focuses on an abstract set-based representation of chemical reactions via facilitation …
Controllability of reaction systems
Controlling a dynamical system is the ability of changing its configuration arbitrarily through
a suitable choice of inputs. It is a very well-studied concept in control theory, with wide …
a suitable choice of inputs. It is a very well-studied concept in control theory, with wide …
Evolvability of reaction systems and the invisibility theorem
Many biological extensions and new features have been proposed on the original
framework of reaction systems, in this fast-growing and now well-established research area …
framework of reaction systems, in this fast-growing and now well-established research area …
Fixed points and attractors of additive reaction systems
Reaction systems are discrete dynamical systems that simulate biological processes within
living cells through finite sets of reactants, inhibitors, and products. In this paper, we study …
living cells through finite sets of reactants, inhibitors, and products. In this paper, we study …
Efficient simulation of reaction systems on graphics processing units
Reaction systems represent a theoretical framework based on the regulation mechanisms of
facilitation and inhibition of biochemical reactions. The dynamic process defined by a …
facilitation and inhibition of biochemical reactions. The dynamic process defined by a …
Monotone control of R systems
R Yako, D Ise, K Komiya, K Fujimoto… - New Generation …, 2022 - Springer
R system is a mathematical model for analyzing bio-chemical reactions. This paper
proposes a framework on the control of R systems. In particular, we develop a theory of …
proposes a framework on the control of R systems. In particular, we develop a theory of …