[HTML][HTML] Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global …

KM Ruppert, RJ Kline, MS Rahman - Global Ecology and Conservation, 2019 - Elsevier
Environmental DNA (eDNA) metabarcoding is a novel method of assessing biodiversity
wherein samples are taken from the environment via water, sediment or air from which DNA …

The rhizosphere microbiome and plant health

RL Berendsen, CMJ Pieterse, PAHM Bakker - Trends in plant science, 2012 - cell.com
The diversity of microbes associated with plant roots is enormous, in the order of tens of
thousands of species. This complex plant-associated microbial community, also referred to …

FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild

NH Nguyen, Z Song, ST Bates, S Branco, L Tedersoo… - Fungal ecology, 2016 - Elsevier
Fungi typically live in highly diverse communities composed of multiple ecological guilds.
Although high-throughput sequencing has greatly increased the ability to quantify the …

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

CL Schoch, KA Seifert, S Huhndorf… - Proceedings of the …, 2012 - National Acad Sciences
Six DNA regions were evaluated as potential DNA barcodes for Fungi, the second largest
kingdom of eukaryotic life, by a multinational, multilaboratory consortium. The region of the …

[HTML][HTML] Environmental DNA–An emerging tool in conservation for monitoring past and present biodiversity

PF Thomsen, E Willerslev - Biological conservation, 2015 - Elsevier
The continuous decline in Earth's biodiversity represents a major crisis and challenge for the
21st century, and there is international political agreement to slow down or halt this decline …

Mycorrhizal ecology and evolution: the past, the present, and the future

MGA van Der Heijden, FM Martin, MA Selosse… - New …, 2015 - Wiley Online Library
Almost all land plants form symbiotic associations with mycorrhizal fungi. These below‐
ground fungi play a key role in terrestrial ecosystems as they regulate nutrient and carbon …

A DNA-based registry for all animal species: the Barcode Index Number (BIN) system

S Ratnasingham, PDN Hebert - PloS one, 2013 - journals.plos.org
Because many animal species are undescribed, and because the identification of known
species is often difficult, interim taxonomic nomenclature has often been used in biodiversity …

Soil bacterial and fungal communities across a pH gradient in an arable soil

J Rousk, E Bååth, PC Brookes, CL Lauber… - The ISME …, 2010 - academic.oup.com
Soils collected across a long-term liming experiment (pH 4.0–8.3), in which variation in
factors other than pH have been minimized, were used to investigate the direct influence of …

The UNITE database for molecular identification of fungi–recent updates and future perspectives

K Abarenkov, RH Nilsson, KH Larsson, IJ Alexander… - The New …, 2010 - JSTOR
Ectomycorrhizal (ECM) fungi are typically examined for taxonomic affiliation through
sequence similarity searches involving the internal transcribed spacer (ITS) region of the …

Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

TG Frøslev, R Kjøller, HH Bruun, R Ejrnæs… - Nature …, 2017 - nature.com
DNA metabarcoding is promising for cost-effective biodiversity monitoring, but reliable
diversity estimates are difficult to achieve and validate. Here we present and validate a …