[HTML][HTML] Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global …

KM Ruppert, RJ Kline, MS Rahman - Global Ecology and Conservation, 2019 - Elsevier
Environmental DNA (eDNA) metabarcoding is a novel method of assessing biodiversity
wherein samples are taken from the environment via water, sediment or air from which DNA …

Environmental DNA (eDNA): Powerful technique for biodiversity conservation

A Sahu, N Kumar, CP Singh, M Singh - Journal for Nature Conservation, 2023 - Elsevier
Environmental DNA metabarcoding is a non-invasive method for discovering and identifying
rare and endangered species in a variety of ecosystems, including aquatic environments …

High-throughput sequencing view on the magnitude of global fungal diversity

P Baldrian, T Větrovský, C Lepinay, P Kohout - Fungal Diversity, 2022 - Springer
High-throughput DNA sequencing has dramatically transformed several areas of biodiversity
research including mycology. Despite limitations, high-throughput sequencing is nowadays …

Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

TG Frøslev, R Kjøller, HH Bruun, R Ejrnæs… - Nature …, 2017 - nature.com
DNA metabarcoding is promising for cost-effective biodiversity monitoring, but reliable
diversity estimates are difficult to achieve and validate. Here we present and validate a …

FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild

NH Nguyen, Z Song, ST Bates, S Branco, L Tedersoo… - Fungal ecology, 2016 - Elsevier
Fungi typically live in highly diverse communities composed of multiple ecological guilds.
Although high-throughput sequencing has greatly increased the ability to quantify the …

Mycorrhizal ecology and evolution: the past, the present, and the future

MGA van Der Heijden, FM Martin, MA Selosse… - New …, 2015 - Wiley Online Library
Almost all land plants form symbiotic associations with mycorrhizal fungi. These below‐
ground fungi play a key role in terrestrial ecosystems as they regulate nutrient and carbon …

[HTML][HTML] Environmental DNA–An emerging tool in conservation for monitoring past and present biodiversity

PF Thomsen, E Willerslev - Biological conservation, 2015 - Elsevier
The continuous decline in Earth's biodiversity represents a major crisis and challenge for the
21st century, and there is international political agreement to slow down or halt this decline …

Microbial coexistence in the rhizosphere and the promotion of plant stress resistance: a review

J Ge, D Li, J Ding, X **ao, Y Liang - Environmental Research, 2023 - Elsevier
Plants can recruit soil microorganisms into the rhizosphere when experiencing various
environmental stresses, including biotic (eg, insect pests) and abiotic (eg, heavy metal …

Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees

B Beckers, M Op De Beeck, N Weyens, W Boerjan… - Microbiome, 2017 - Springer
Background The plant microbiome represents one of the key determinants of plant health
and productivity by providing a plethora of functional capacities such as access to low …

[HTML][HTML] ITS alchemy: on the use of ITS as a DNA marker in fungal ecology

H Kauserud - Fungal Ecology, 2023 - Elsevier
High throughput sequencing of PCR amplicons derived from environmental DNA (aka DNA
metabarcoding) has become an integral part of fungal ecology, enabling in-depth …