[HTML][HTML] SYNAPSE: An international roadmap to large brain imaging

APJ Stampfl, Z Liu, J Hu, K Sawada, H Takano… - Physics Reports, 2023 - Elsevier
Since 2020, synchrotron radiation facilities in several Asia-Pacific countries have been
collaborating in a major project called “SYNAPSE”(Synchrotrons for Neuroscience: an Asia …

Large-scale automated identification of mouse brain cells in confocal light sheet microscopy images

P Frasconi, L Silvestri, P Soda, R Cortini… - …, 2014 - academic.oup.com
Motivation: Recently, confocal light sheet microscopy has enabled high-throughput
acquisition of whole mouse brain 3D images at the micron scale resolution. This poses the …

Neuronal population reconstruction from ultra-scale optical microscopy images via progressive learning

J Zhao, X Chen, Z **ong, D Liu, J Zeng… - … on Medical Imaging, 2020 - ieeexplore.ieee.org
Reconstruction of neuronal populations from ultra-scale optical microscopy (OM) images is
essential to investigate neuronal circuits and brain mechanisms. The noises, low contrast …

Weakly supervised neuron reconstruction from optical microscopy images with morphological priors

X Chen, C Zhang, J Zhao, Z **ong… - IEEE Transactions on …, 2021 - ieeexplore.ieee.org
Manually labeling neurons from high-resolution but noisy and low-contrast optical
microscopy (OM) images is tedious. As a result, the lack of annotated data poses a key …

[PDF][PDF] Segmentation of static and dynamic atomic-resolution microscopy data sets with unsupervised machine learning using local symmetry descriptors

N Wang, C Freysoldt, S Zhang… - Microscopy and …, 2021 - cambridge.org
We present an unsupervised machine learning approach for segmentation of static and
dynamic atomic-resolution microscopy data sets in the form of images and video sequences …

An accurate and universal approach for short-exposure-time microscopy image enhancement

F Chen, J Liu, D Gou, X Zhang, L Chen… - … Medical Imaging and …, 2020 - Elsevier
Fluorescence microscopy imaging has become an essential technique in the biology and
biomedical science which can provide comprehensive visualization of many biological …

Deep neural networks learn meta-structures from noisy labels in semantic segmentation

Y Luo, G Liu, Y Guo, G Yang - Proceedings of the AAAI Conference on …, 2022 - ojs.aaai.org
How deep neural networks (DNNs) learn from noisy labels has been studied extensively in
image classification but much less in image segmentation. So far, our understanding of the …

Residential roof condition assessment system using deep learning

F Wang, JP Kerekes, Z Xu… - Journal of applied remote …, 2018 - spiedigitallibrary.org
The emergence of high resolution (HR) and ultra high resolution (UHR) airborne remote
sensing imagery is enabling humans to move beyond traditional land cover analysis …

Large-scale localization of touching somas from 3D images using density-peak clustering

S Cheng, T Quan, X Liu, S Zeng - BMC bioinformatics, 2016 - Springer
Background Soma localization is an important step in computational neuroscience to map
neuronal circuits. However, locating somas from large-scale and complicated datasets is …

3D contouring for breast tumor in sonography

DR Chen, YC Lin, YL Huang - arxiv preprint arxiv:1901.09407, 2019 - arxiv.org
Malignant and benign breast tumors present differently in their shape and size on
sonography. Morphological information provided by tumor contours are important in clinical …