Evolutionary analysis of a complete chicken genome
Z Huang, Z Xu, H Bai, Y Huang… - Proceedings of the …, 2023 - National Acad Sciences
Microchromosomes are prevalent in nonmammalian vertebrates [PD Waters et al., Proc.
Natl. Acad. Sci. USA 118 (2021)], but a few of them are missing in bird genome assemblies …
Natl. Acad. Sci. USA 118 (2021)], but a few of them are missing in bird genome assemblies …
Long non-coding RNAs and their “discrete” contribution to IBD and Johne's disease—what stands out in the current picture? A comprehensive review
KA Triantaphyllopoulos - International Journal of Molecular Sciences, 2023 - mdpi.com
Non-coding RNAs (ncRNA) have paved the way to new perspectives on the regulation of
gene expression, not only in biology and medicine, but also in associated fields and …
gene expression, not only in biology and medicine, but also in associated fields and …
Pig genome functional annotation enhances the biological interpretation of complex traits and human disease
The functional annotation of livestock genomes is crucial for understanding the molecular
mechanisms that underpin complex traits of economic importance, adaptive evolution and …
mechanisms that underpin complex traits of economic importance, adaptive evolution and …
[HTML][HTML] Invited review: Good practices in genome-wide association studies to identify candidate sequence variants in dairy cattle
Genotype data from dairy cattle selection programs have greatly facilitated GWAS to identify
variants related to economic traits. Results can enhance the accuracy of genomic prediction …
variants related to economic traits. Results can enhance the accuracy of genomic prediction …
Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary …
Y Zhou, L Yang, X Han, J Han, Y Hu, F Li… - Genome …, 2022 - genome.cshlp.org
A cattle pangenome representation was created based on the genome sequences of 898
cattle representing 57 breeds. The pangenome identified 83 Mb of sequence not found in …
cattle representing 57 breeds. The pangenome identified 83 Mb of sequence not found in …
An atlas of regulatory elements in chicken: A resource for chicken genetics and genomics
A comprehensive characterization of regulatory elements in the chicken genome across
tissues will have substantial impacts on both fundamental and applied research. Here, we …
tissues will have substantial impacts on both fundamental and applied research. Here, we …
Ensembl 2025
SC Dyer, O Austine-Orimoloye, AG Azov… - Nucleic Acids …, 2025 - academic.oup.com
Abstract Ensembl (www. ensembl. org) is an open platform integrating publicly available
genomics data across the tree of life with a focus on eukaryotic species related to human …
genomics data across the tree of life with a focus on eukaryotic species related to human …
Structural variation and introgression from wild populations in East Asian cattle genomes confer adaptation to local environment
X **a, F Zhang, S Li, X Luo, L Peng, Z Dong, H Pausch… - Genome Biology, 2023 - Springer
Abstract Background Structural variations (SVs) in individual genomes are major
determinants of complex traits, including adaptability to environmental variables. The …
determinants of complex traits, including adaptability to environmental variables. The …
Meta-analysis of six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance
Background Mastitis is a disease that incurs significant costs in the dairy industry. A
promising approach to mitigate its negative effects is to genetically improve the resistance of …
promising approach to mitigate its negative effects is to genetically improve the resistance of …
RGD v2. 0: a major update of the ruminant functional and evolutionary genomics database
W Fu, R Wang, HA Nanaei, J Wang, D Hu… - Nucleic Acids …, 2022 - academic.oup.com
Abstract Ruminant Genome Database (RGD; http://animal. nwsuaf. edu. cn/RGD) provides
visualization and analysis tools for ruminant comparative genomics and functional …
visualization and analysis tools for ruminant comparative genomics and functional …