Superficial white matter analysis: An efficient point-cloud-based deep learning framework with supervised contrastive learning for consistent tractography parcellation …

T Xue, F Zhang, C Zhang, Y Chen, Y Song… - Medical image …, 2023 - Elsevier
Diffusion MRI tractography is an advanced imaging technique that enables in vivo map**
of the brain's white matter connections. White matter parcellation classifies tractography …

Supwma: consistent and efficient tractography parcellation of superficial white matter with deep learning

T Xue, F Zhang, C Zhang, Y Chen… - 2022 IEEE 19th …, 2022 - ieeexplore.ieee.org
White matter parcellation classifies tractography streamlines into clusters or anatomically
meaningful tracts to enable quantification and visualization. Most parcellation methods focus …

PointNeuron: 3D Neuron Reconstruction via Geometry and Topology Learning of Point Clouds

R Zhao, H Wang, C Zhang… - Proceedings of the IEEE …, 2023 - openaccess.thecvf.com
Digital neuron reconstruction from 3D microscopy images is an essential technique for
investigating brain connectomics and neuron morphology. Existing reconstruction …

White matter tracts are point clouds: neuropsychological score prediction and critical region localization via geometric deep learning

Y Chen, F Zhang, C Zhang, T Xue… - … Conference on Medical …, 2022 - Springer
White matter tract microstructure has been shown to influence neuropsychological scores of
cognitive performance. However, prediction of these scores from white matter tract data has …

[HTML][HTML] Deep fiber clustering: anatomically informed fiber clustering with self-supervised deep learning for fast and effective tractography parcellation

Y Chen, C Zhang, T Xue, Y Song, N Makris, Y Rathi… - NeuroImage, 2023 - Elsevier
White matter fiber clustering is an important strategy for white matter parcellation, which
enables quantitative analysis of brain connections in health and disease. In combination …

TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance

Y Chen, LR Zekelman, C Zhang, T Xue, Y Song… - Medical Image …, 2024 - Elsevier
We propose a geometric deep-learning-based framework, TractGeoNet, for performing
regression using diffusion magnetic resonance imaging (dMRI) tractography and associated …

TractGraphFormer: Anatomically Informed Hybrid Graph CNN-Transformer Network for Classification from Diffusion MRI Tractography

Y Chen, F Zhang, M Wang, LR Zekelman… - arxiv preprint arxiv …, 2024 - arxiv.org
The relationship between brain connections and non-imaging phenotypes is increasingly
studied using deep neural networks. However, the local and global properties of the brain's …

TractCloud: Registration-free tractography parcellation with a novel local-global streamline point cloud representation

T Xue, Y Chen, C Zhang, AJ Golby, N Makris… - … Conference on Medical …, 2023 - Springer
Diffusion MRI tractography parcellation classifies streamlines into anatomical fiber tracts to
enable quantification and visualization for clinical and scientific applications. Current …

[HTML][HTML] Randomized iterative spherical‐deconvolution informed tractogram filtering

A Hain, D Jörgens, R Moreno - NeuroImage, 2023 - Elsevier
Tractography has become an indispensable part of brain connectivity studies. However, it is
currently facing problems with reliability. In particular, a substantial amount of nerve fiber …

TractGraphFormer: Anatomically Informed Hybrid Graph CNN-Transformer Network for Interpretable Sex and Age Prediction from Diffusion MRI Tractography

Y Chen, F Zhang, M Wang, LR Zekelman… - Medical Image …, 2025 - Elsevier
The relationship between brain connections and non-imaging phenotypes is increasingly
studied using deep neural networks. However, the local and global properties of the brain's …