Big data in basic and translational cancer research

P Jiang, S Sinha, K Aldape, S Hannenhalli… - Nature Reviews …, 2022 - nature.com
Historically, the primary focus of cancer research has been molecular and clinical studies of
a few essential pathways and genes. Recent years have seen the rapid accumulation of …

Data infrastructures for AI in medical imaging: a report on the experiences of five EU projects

H Kondylakis, V Kalokyri, S Sfakianakis… - European radiology …, 2023 - Springer
Artificial intelligence (AI) is transforming the field of medical imaging and has the potential to
bring medicine from the era of 'sick-care'to the era of healthcare and prevention. The …

Foundation model for cancer imaging biomarkers

S Pai, D Bontempi, I Hadzic, V Prudente… - Nature machine …, 2024 - nature.com
Foundation models in deep learning are characterized by a single large-scale model trained
on vast amounts of data serving as the foundation for various downstream tasks. Foundation …

Monai label: A framework for ai-assisted interactive labeling of 3d medical images

A Diaz-Pinto, S Alle, V Nath, Y Tang, A Ihsani… - Medical Image …, 2024 - Elsevier
The lack of annotated datasets is a major bottleneck for training new task-specific
supervised machine learning models, considering that manual annotation is extremely …

The bioimage archive–building a home for life-sciences microscopy data

M Hartley, GJ Kleywegt, A Patwardhan… - Journal of Molecular …, 2022 - Elsevier
Despite the huge impact of data resources in genomics and structural biology, until now
there has been no central archive for biological data for all imaging modalities. The …

MITI minimum information guidelines for highly multiplexed tissue images

D Schapiro, C Yapp, A Sokolov, SM Reynolds… - Nature …, 2022 - nature.com
The imminent release of tissue atlases combining multichannel microscopy with single-cell
sequencing and other omics data from normal and diseased specimens creates an urgent …

National Cancer Institute Imaging Data Commons: toward transparency, reproducibility, and scalability in imaging artificial intelligence

A Fedorov, WJR Longabaugh, D Pot, DA Clunie… - Radiographics, 2023 - pubs.rsna.org
The remarkable advances of artificial intelligence (AI) technology are revolutionizing
established approaches to the acquisition, interpretation, and analysis of biomedical …

[HTML][HTML] Thirty years of the DICOM standard

M Larobina - Tomography, 2023 - mdpi.com
Digital Imaging and Communications in Medicine (DICOM) is an international standard that
defines a format for storing medical images and a protocol to enable and facilitate data …

NCI cancer research data commons: resources to share key cancer data

Z Wang, TM Davidsen, GR Kuffel, KD Addepalli… - Cancer …, 2024 - aacrjournals.org
Since 2014, the NCI has launched a series of data commons as part of the Cancer Research
Data Commons (CRDC) ecosystem housing genomic, proteomic, imaging, and clinical data …

Must-have qualities of clinical research on artificial intelligence and machine learning

B Koçak, R Cuocolo, DP Dos Santos… - Balkan Medical …, 2023 - pmc.ncbi.nlm.nih.gov
In the field of computer science, known as artificial intelligence, algorithms imitate reasoning
tasks that are typically performed by humans. The techniques that allow machines to learn …