An ontology-based knowledge graph for representing interactions involving RNA molecules

E Cavalleri, A Cabri, M Soto-Gomez, S Bonfitto… - Scientific Data, 2024 - nature.com
The “RNA world” represents a novel frontier for the study of fundamental biological
processes and human diseases and is paving the way for the development of new drugs …

Hierarchical ensemble methods for protein function prediction

G Valentini - International Scholarly Research Notices, 2014 - Wiley Online Library
Protein function prediction is a complex multiclass multilabel classification problem,
characterized by multiple issues such as the incompleteness of the available annotations …

Building data warehouses with semantic web data

V Nebot, R Berlanga - Decision Support Systems, 2012 - Elsevier
The Semantic Web (SW) deployment is now a realization and the amount of semantic
annotations is ever increasing thanks to several initiatives that promote a change in the …

A meta-graph for the construction of an rna-centered knowledge graph

E Cavalleri, S Bonfitto, A Cabri, J Gliozzo… - … Work-Conference on …, 2023 - Springer
The COVID-19 pandemic highlighted the importance of RNA-based technologies for the
development of new vaccines. Besides vaccines, a world of RNA-based drugs, including …

Generation of open biomedical datasets through ontology-driven transformation and integration processes

M Carmen Legaz-García, JA Miñarro-Giménez… - Journal of biomedical …, 2016 - Springer
Background Biomedical research usually requires combining large volumes of data from
multiple heterogeneous sources, which makes difficult the integrated exploitation of such …

RNA-KG: An ontology-based knowledge graph for representing interactions involving RNA molecules

E Cavalleri, A Cabri, M Soto-Gomez, S Bonfitto… - arxiv preprint arxiv …, 2023 - arxiv.org
The" RNA world" represents a novel frontier for the study of fundamental biological
processes and human diseases and is paving the way for the development of new drugs …

[PDF][PDF] An ontology-based knowledge graph for representing interactions involving RNA

E Cavalleri, A Cabri, M Soto-Gomez - Scientific Data, 11 (1), 2024 - core.ac.uk
Emanuele Cavalleri 1, alberto Cabri1, Mauricio Soto-Gomez1, Sara Bonfitto1, Paolo
Perlasca1, Jessica Gliozzo 1, Tiffany J. Callahan 2, Justin Reese3, Peter N. Robinson 4, 5 …

Exploring and linking biomedical resources through multidimensional semantic spaces

R Berlanga, E Jiménez-Ruiz, V Nebot - BMC bioinformatics, 2012 - Springer
Background The semantic integration of biomedical resources is still a challenging issue
which is required for effective information processing and data analysis. The availability of …

A study on multi-omic oscillations in Escherichia coli metabolic networks

F Bardozzo, P Lió, R Tagliaferri - BMC bioinformatics, 2018 - Springer
Background Two important challenges in the analysis of molecular biology information are
data (multi-omic information) integration and the detection of patterns across large scale …

UNIPred-Web: a web tool for the integration and visualization of biomolecular networks for protein function prediction

P Perlasca, M Frasca, CT Ba, M Notaro, A Petrini… - Bmc Bioinformatics, 2019 - Springer
Background One of the main issues in the automated protein function prediction (AFP)
problem is the integration of multiple networked data sources. The UNIPred algorithm was …