LSD1: more than demethylation of histone lysine residues

B Perillo, A Tramontano, A Pezone… - Experimental & molecular …, 2020 - nature.com
Lysine-specific histone demethylase 1 (LSD1) represents the first example of an identified
nuclear protein with histone demethylase activity. In particular, it plays a special role in the …

Retinoic acid receptors: from molecular mechanisms to cancer therapy

A Di Masi, L Leboffe, E De Marinis, F Pagano… - Molecular aspects of …, 2015 - Elsevier
Retinoic acid (RA), the major bioactive metabolite of retinol or vitamin A, induces a spectrum
of pleiotropic effects in cell growth and differentiation that are relevant for embryonic …

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

SG Landt, GK Marinov, A Kundaje… - Genome …, 2012 - genome.cshlp.org
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-
seq) has become a valuable and widely used approach for map** the genomic location of …

A vitamin D receptor/SMAD genomic circuit gates hepatic fibrotic response

N Ding, TY Ruth, N Subramaniam, MH Sherman… - Cell, 2013 - cell.com
Liver fibrosis is a reversible wound-healing response involving TGFβ1/SMAD activation of
hepatic stellate cells (HSCs). It results from excessive deposition of extracellular matrix …

Most random gene expression signatures are significantly associated with breast cancer outcome

D Venet, JE Dumont, V Detours - PLoS computational biology, 2011 - journals.plos.org
Bridging the gap between animal or in vitro models and human disease is essential in
medical research. Researchers often suggest that a biological mechanism is relevant to …

Vitamin A and retinoid signaling: genomic and nongenomic effects: thematic review series: fat-soluble vitamins: vitamin A

Z Al Tanoury, A Piskunov, C Rochette-Egly - Journal of lipid research, 2013 - ASBMB
Vitamin A or retinol is arguably the most multifunctional vitamin in the human body, as it is
essential from embryogenesis to adulthood. The pleiotropic effects of vitamin A are exerted …

A user's guide to the encyclopedia of DNA elements (ENCODE)

ENCODE Project Consortium - PLoS biology, 2011 - journals.plos.org
The mission of the Encyclopedia of DNA Elements (ENCODE) Project is to enable the
scientific and medical communities to interpret the human genome sequence and apply it to …

Retinoids, retinoic acid receptors, and cancer

XH Tang, LJ Gudas - Annual Review of Pathology: Mechanisms …, 2011 - annualreviews.org
Retinoids (ie, vitamin A, all-trans retinoic acid, and related signaling molecules) induce the
differentiation of various types of stem cells. Nuclear retinoic acid receptors mediate most but …

A user's guide to the encyclopedia of DNA elements (ENCODE)

RM Myers, J Stamatoyannopoulos, M Snyder… - PLoS …, 2011 - discovery.ucl.ac.uk
The mission of the Encyclopedia of DNA Elements (ENCODE) Project is to enable the
scientific and medical communities to interpret the human genome sequence and apply it to …

Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding

SC Biddie, S John, PJ Sabo, RE Thurman, TA Johnson… - Molecular cell, 2011 - cell.com
Ligand-dependent transcription by the nuclear receptor glucocorticoid receptor (GR) is
mediated by interactions with coregulators. The role of these interactions in determining …