Recent advances in 2D and 3D in vitro systems using primary hepatocytes, alternative hepatocyte sources and non-parenchymal liver cells and their use in …

P Godoy, NJ Hewitt, U Albrecht, ME Andersen… - Archives of …, 2013‏ - Springer
This review encompasses the most important advances in liver functions and hepatotoxicity
and analyzes which mechanisms can be studied in vitro. In a complex architecture of nested …

[HTML][HTML] How computational models can help unlock biological systems

GW Brodland - Seminars in cell & developmental biology, 2015‏ - Elsevier
With computation models playing an ever increasing role in the advancement of science, it is
important that researchers understand what it means to model something; recognize the …

Active vertex model for cell-resolution description of epithelial tissue mechanics

DL Barton, S Henkes, CJ Weijer… - PLoS computational …, 2017‏ - journals.plos.org
We introduce an Active Vertex Model (AVM) for cell-resolution studies of the mechanics of
confluent epithelial tissues consisting of tens of thousands of cells, with a level of detail …

Simulating tissue mechanics with agent-based models: concepts, perspectives and some novel results

P Van Liedekerke, MM Palm, N Jagiella… - Computational particle …, 2015‏ - Springer
In this paper we present an overview of agent-based models that are used to simulate
mechanical and physiological phenomena in cells and tissues, and we discuss underlying …

Nonlinear modelling of cancer: bridging the gap between cells and tumours

JS Lowengrub, HB Frieboes, F **, YL Chuang, X Li… - …, 2009‏ - iopscience.iop.org
Despite major scientific, medical and technological advances over the last few decades, a
cure for cancer remains elusive. The disease initiation is complex, and including initiation …

Multiscale cancer modeling

TS Deisboeck, Z Wang, P Macklin… - Annual review of …, 2011‏ - annualreviews.org
Simulating cancer behavior across multiple biological scales in space and time, ie,
multiscale cancer modeling, is increasingly being recognized as a powerful tool to refine …

The roots of bioinformatics in theoretical biology

P Hogeweg - PLoS computational biology, 2011‏ - journals.plos.org
From the late 1980s onward, the term “bioinformatics” mostly has been used to refer to
computational methods for comparative analysis of genome data. However, the term was …

Physical models of collective cell motility: from cell to tissue

BA Camley, WJ Rappel - Journal of physics D: Applied physics, 2017‏ - iopscience.iop.org
In this article, we review physics-based models of collective cell motility. We discuss a range
of techniques at different scales, ranging from models that represent cells as simple self …

Measuring forces and stresses in situ in living tissues

K Sugimura, PF Lenne, F Graner - Development, 2016‏ - journals.biologists.com
Development, homeostasis and regeneration of tissues result from a complex combination
of genetics and mechanics, and progresses in the former have been quicker than in the …

[کتاب][B] Mathematical modeling of biological pattern formation

A Deutsch, S Dormann, A Deutsch, S Dormann - 2017‏ - Springer
The application of mathematical models to explain the dynamics of biological pattern
formation started with the work of D'Arcy Thompson who showed that mathematics cannot …