Best practices in designing, sequencing, and identifying random DNA barcodes
Random DNA barcodes are a versatile tool for tracking cell lineages, with applications
ranging from development to cancer to evolution. Here, we review and critically evaluate …
ranging from development to cancer to evolution. Here, we review and critically evaluate …
DeLTA 2.0: A deep learning pipeline for quantifying single-cell spatial and temporal dynamics
Improvements in microscopy software and hardware have dramatically increased the pace
of image acquisition, making analysis a major bottleneck in generating quantitative, single …
of image acquisition, making analysis a major bottleneck in generating quantitative, single …
Genetic parts and enabling tools for biocircuit design
Synthetic biology aims to engineer biological systems for customized tasks through the
bottom-up assembly of fundamental building blocks, which requires high-quality libraries of …
bottom-up assembly of fundamental building blocks, which requires high-quality libraries of …
A plasmid system with tunable copy number
Plasmids are one of the most commonly used platforms for genetic engineering and
recombinant gene expression in bacteria. The range of available copy numbers for cloning …
recombinant gene expression in bacteria. The range of available copy numbers for cloning …
Partitioning of a 2-bit hash function across 66 communicating cells
JP Padmakumar, JJ Sun, W Cho, Y Zhou… - Nature Chemical …, 2024 - nature.com
Powerful distributed computing can be achieved by communicating cells that individually
perform simple operations. Here, we report design software to divide a large genetic circuit …
perform simple operations. Here, we report design software to divide a large genetic circuit …
Spin-split collinear antiferromagnets: A large-scale ab-initio study
It was recently discovered that, depending on their symmetries, collinear antiferromagnets
can actually break the spin degeneracy in momentum space, even in the absence of spin …
can actually break the spin degeneracy in momentum space, even in the absence of spin …
An optogenetic toolkit for light-inducible antibiotic resistance
Antibiotics are a key control mechanism for synthetic biology and microbiology. Resistance
genes are used to select desired cells and regulate bacterial populations, however their use …
genes are used to select desired cells and regulate bacterial populations, however their use …
Genetic circuit characterization by inferring RNA polymerase movement and ribosome usage
To perform their computational function, genetic circuits change states through a symphony
of genetic parts that turn regulator expression on and off. Debugging is frustrated by an …
of genetic parts that turn regulator expression on and off. Debugging is frustrated by an …
Profile and resistance levels of 136 integron resistance genes
Integrons have played a major role in the rise and spread of multidrug resistance in Gram-
negative pathogens and are nowadays commonplace among clinical isolates. These …
negative pathogens and are nowadays commonplace among clinical isolates. These …
Redesign of an Escherichia coli Nissle treatment for phenylketonuria using insulated genomic landing pads and genetic circuits to reduce burden
To build therapeutic strains, Escherichia coli Nissle (EcN) have been engineered to express
antibiotics, toxin-degrading enzymes, immunoregulators, and anti-cancer chemotherapies …
antibiotics, toxin-degrading enzymes, immunoregulators, and anti-cancer chemotherapies …