The genetics of multiple sclerosis: from 0 to 200 in 50 years

SE Baranzini, JR Oksenberg - Trends in genetics, 2017 - cell.com
Multiple sclerosis (MS) is a common autoimmune disease that targets myelin in the central
nervous system (CNS). Multiple genome-wide association studies (GWAS) over the past 10 …

Evolution of transcription factor binding in metazoans—mechanisms and functional implications

D Villar, P Flicek, DT Odom - Nature Reviews Genetics, 2014 - nature.com
Differences in transcription factor binding can contribute to organismal evolution by altering
downstream gene expression programmes. Genome-wide studies in Drosophila …

Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility

International Multiple Sclerosis Genetics Consortium*†… - Science, 2019 - science.org
INTRODUCTION Multiple sclerosis (MS) is an inflammatory and degenerative disease of the
central nervous system (CNS) that often presents in young adults. Over the past decade …

[HTML][HTML] Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages

D Schmidt, PC Schwalie, MD Wilson, B Ballester… - Cell, 2012 - cell.com
CTCF-binding locations represent regulatory sequences that are highly constrained over the
course of evolution. To gain insight into how these DNA elements are conserved and spread …

ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data

JH Yang, JH Li, S Jiang, H Zhou… - Nucleic acids research, 2013 - academic.oup.com
Long non-coding RNAs (lncRNAs) and microRNAs (miRNAs) represent two classes of
important non-coding RNAs in eukaryotes. Although these non-coding RNAs have been …

Genome-wide nucleosome positioning during embryonic stem cell development

VB Teif, Y Vainshtein, M Caudron-Herger… - Nature structural & …, 2012 - nature.com
We determined genome-wide nucleosome occupancies in mouse embryonic stem cells and
their neural progenitor and embryonic fibroblast counterparts to assess features associated …

Develo** in 3D: the role of CTCF in cell differentiation

RG Arzate-Mejía, F Recillas-Targa… - Development, 2018 - journals.biologists.com
ABSTRACT CTCF is a highly conserved zinc-finger DNA-binding protein that mediates
interactions between distant sequences in the genome. As a consequence, CTCF regulates …

CTCF regulates the human p53 gene through direct interaction with its natural antisense transcript, Wrap53

R Saldaña-Meyer, E González-Buendía… - Genes & …, 2014 - genesdev.cshlp.org
The multifunctional CCCTC-binding factor (CTCF) protein exhibits a broad range of
functions, including that of insulator and higher-order chromatin organizer. We found that …

De novo prediction of DNA-binding specificities for Cys2His2 zinc finger proteins

AV Persikov, M Singh - Nucleic acids research, 2014 - academic.oup.com
Proteins with sequence-specific DNA binding function are important for a wide range of
biological activities. De novo prediction of their DNA-binding specificities from sequence …

Functional analysis of transcription factor binding sites in human promoters

TW Whitfield, J Wang, PJ Collins, EC Partridge… - Genome biology, 2012 - Springer
Background The binding of transcription factors to specific locations in the genome is
integral to the orchestration of transcriptional regulation in cells. To characterize transcription …