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Advances and utility of the human plasma proteome
The study of proteins circulating in blood offers tremendous opportunities to diagnose,
stratify, or possibly prevent diseases. With recent technological advances and the urgent …
stratify, or possibly prevent diseases. With recent technological advances and the urgent …
A high-stringency blueprint of the human proteome
Abstract The Human Proteome Organization (HUPO) launched the Human Proteome Project
(HPP) in 2010, creating an international framework for global collaboration, data sharing …
(HPP) in 2010, creating an international framework for global collaboration, data sharing …
The ProteomeXchange consortium in 2020: enabling 'big data'approaches in proteomics
EW Deutsch, N Bandeira, V Sharma… - Nucleic acids …, 2020 - academic.oup.com
The ProteomeXchange (PX) consortium of proteomics resources (http://www.
proteomexchange. org) has standardized data submission and dissemination of mass …
proteomexchange. org) has standardized data submission and dissemination of mass …
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Abstract The PRoteomics IDEntifications (PRIDE) database (https://www. ebi. ac. uk/pride/) is
the world's largest data repository of mass spectrometry-based proteomics data, and is one …
the world's largest data repository of mass spectrometry-based proteomics data, and is one …
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
Abstract Genome‐, transcriptome‐and proteome‐wide measurements provide insights into
how biological systems are regulated. However, fundamental aspects relating to which …
how biological systems are regulated. However, fundamental aspects relating to which …
What can Ribo-Seq, immunopeptidomics, and proteomics tell us about the noncanonical proteome?
Abstract Ribosome profiling (Ribo-Seq) has proven transformative for our understanding of
the human genome and proteome by illuminating thousands of noncanonical sites of …
the human genome and proteome by illuminating thousands of noncanonical sites of …
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
Abstract The ProteomeXchange (PX) Consortium of proteomics resources (http://www.
proteomexchange. org) was formally started in 2011 to standardize data submission and …
proteomexchange. org) was formally started in 2011 to standardize data submission and …
The neXtProt knowledgebase in 2020: data, tools and usability improvements
M Zahn-Zabal, PA Michel, A Gateau… - Nucleic Acids …, 2020 - academic.oup.com
Abstract The neXtProt knowledgebase (https://www. nextprot. org) is an integrative resource
providing both data on human protein and the tools to explore these. In order to provide …
providing both data on human protein and the tools to explore these. In order to provide …
The 2022 report on the human proteome from the HUPO human proteome project
The 2022 Metrics of the Human Proteome from the HUPO Human Proteome Project (HPP)
show that protein expression has now been credibly detected (neXtProt PE1 level) for 18 …
show that protein expression has now been credibly detected (neXtProt PE1 level) for 18 …
SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
High-throughput sequencing of full-length transcripts using long reads has paved the way
for the discovery of thousands of novel transcripts, even in well-annotated mammalian …
for the discovery of thousands of novel transcripts, even in well-annotated mammalian …