Molecular mechanisms of transcription-coupled repair

CP Selby, LA Lindsey-Boltz, W Li… - Annual Review of …, 2023 - annualreviews.org
Transcription-coupled repair (TCR), discovered as preferential nucleotide excision repair of
UV-induced cyclobutane pyrimidine dimers located in transcribed mammalian genes …

The DNA damage response to transcription stress

H Lans, JHJ Hoeijmakers, W Vermeulen… - … reviews Molecular cell …, 2019 - nature.com
The spatiotemporal control of RNA polymerase II (Pol II)-mediated gene transcription is
tightly and intricately regulated. In addition, preservation of the integrity of the DNA template …

Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution

J Hu, S Adar, CP Selby, JD Lieb… - Genes & …, 2015 - genesdev.cshlp.org
We developed a method for genome-wide map** of DNA excision repair named XR-seq
(excision repair sequencing). Human nucleotide excision repair generates two incisions …

Structure and mechanism of pyrimidine–pyrimidone (6-4) photoproduct recognition by the Rad4/XPC nucleotide excision repair complex

D Paul, H Mu, H Zhao, O Ouerfelli… - Nucleic acids …, 2019 - academic.oup.com
Failure in repairing ultraviolet radiation-induced DNA damage can lead to mutations and
cancer. Among UV-lesions, the pyrimidine–pyrimidone (6-4) photoproduct (6-4PP) is …

Methodologies for detecting environmentally induced DNA damage and repair

W Li, A Sancar - Environmental and molecular mutagenesis, 2020 - Wiley Online Library
Environmental DNA damaging agents continuously challenge the integrity of the genome by
introducing a variety of DNA lesions. The DNA damage caused by environmental factors will …

Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome

W Li, O Adebali, Y Yang, CP Selby… - Proceedings of the …, 2018 - pnas.org
We have adapted the eXcision Repair-sequencing (XR-seq) method to generate single-
nucleotide resolution dynamic repair maps of UV-induced cyclobutane pyrimidine dimers …

Nucleotide excision repair of aflatoxin-induced DNA damage within the 3D human genome organization

Y Wu, MM Adeel, D ** of protein–DNA damage interaction by PADD-seq
Y Zhu, Y Tan, L Li, Y **ang, Y Huang… - Nucleic Acids …, 2023 - academic.oup.com
Protein–DNA damage interactions are critical for understanding the mechanism of DNA
repair and damage response. However, due to the relatively random distributions of UV …

Mediator roles going beyond transcription

KM André, EH Sipos, J Soutourina - Trends in Genetics, 2021 - cell.com
Dysfunctions of nuclear processes including transcription and DNA repair lead to severe
human diseases. Gaining an understanding of how these processes operate in the crowded …

Transcription coupled nucleotide excision repair in the yeast Saccharomyces cerevisiae: The ambiguous role of Rad26

S Li - DNA repair, 2015 - Elsevier
Transcription coupled nucleotide excision repair (TC-NER) is believed to be triggered by an
RNA polymerase stalled at a lesion in the transcribed strand of actively transcribed genes …