[HTML][HTML] Networks beyond pairwise interactions: Structure and dynamics

F Battiston, G Cencetti, I Iacopini, V Latora, M Lucas… - Physics reports, 2020 - Elsevier
The complexity of many biological, social and technological systems stems from the richness
of the interactions among their units. Over the past decades, a variety of complex systems …

A mini review of node centrality metrics in biological networks

M Wang, H Wang, H Zheng - International Journal of Network …, 2022 - pure.ulster.ac.uk
The diversity of nodes in a complex network causes each node to have varying significance,
and the important nodes often have a significant impact on the structure and function of the …

Superhypergraph neural networks and plithogenic graph neural networks: Theoretical foundations

T Fujita - arxiv preprint arxiv:2412.01176, 2024 - arxiv.org
Hypergraphs extend traditional graphs by allowing edges to connect multiple nodes, while
superhypergraphs further generalize this concept to represent even more complex …

Analytical methods in untargeted metabolomics: state of the art in 2015

A Alonso, S Marsal, A Julià - Frontiers in bioengineering and …, 2015 - frontiersin.org
Metabolomics comprises the methods and techniques that are used to measure the small
molecule composition of biofluids and tissues, and is actually one of the most rapidly …

Survey of intersection graphs, fuzzy graphs and neutrosophic graphs

T Fujita - … and Uncertainization: Fuzzy, Neutrosophic, Soft, Rough …, 2024 - books.google.com
Graph theory is afundamental branch of mathematicsthat studiesnetworksconsisting of
nodes (vertices) and their connections (edges). Extensive research has been conducted on …

Graphpim: Enabling instruction-level pim offloading in graph computing frameworks

L Nai, R Hadidi, J Sim, H Kim… - … symposium on high …, 2017 - ieeexplore.ieee.org
With the emergence of data science, graph computing has become increasingly important
these days. Unfortunately, graph computing typically suffers from poor performance when …

[HTML][HTML] Study of biological networks using graph theory

W Gao, H Wu, MK Siddiqui, AQ Baig - Saudi journal of biological sciences, 2018 - Elsevier
As an effective modeling, analysis and computational tool, graph theory is widely used in
biological mathematics to deal with various biology problems. In the field of microbiology …

Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst

J **a, DS Wishart - Nature protocols, 2011 - nature.com
MetaboAnalyst is an integrated web-based platform for comprehensive analysis of
quantitative metabolomic data. It is designed to be used by biologists (with little or no …

Targeting Lactobacillus johnsonii to reverse chronic kidney disease

H Miao, F Liu, YN Wang, XY Yu, S Zhuang… - … and Targeted Therapy, 2024 - nature.com
Accumulated evidence suggested that gut microbial dysbiosis interplayed with progressive
chronic kidney disease (CKD). However, no available therapy is effective in suppressing …

Methods for biological data integration: perspectives and challenges

V Gligorijević, N Pržulj - Journal of the Royal Society …, 2015 - royalsocietypublishing.org
Rapid technological advances have led to the production of different types of biological data
and enabled construction of complex networks with various types of interactions between …