cis-Regulatory Elements in Plant Development, Adaptation, and Evolution
cis-Regulatory elements encode the genomic blueprints that ensure the proper
spatiotemporal patterning of gene expression necessary for appropriate development and …
spatiotemporal patterning of gene expression necessary for appropriate development and …
Cis-regulatory sequences in plants: their importance, discovery, and future challenges
The identification and characterization of cis-regulatory DNA sequences and how they
function to coordinate responses to developmental and environmental cues is of paramount …
function to coordinate responses to developmental and environmental cues is of paramount …
Single-nucleus RNA and ATAC sequencing reveals the impact of chromatin accessibility on gene expression in Arabidopsis roots at the single-cell level
A Farmer, S Thibivilliers, KH Ryu, J Schiefelbein… - Molecular Plant, 2021 - cell.com
Similar to other complex organisms, plants consist of diverse and specialized cell types. The
gain of unique biological functions of these different cell types is the consequence of the …
gain of unique biological functions of these different cell types is the consequence of the …
Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root
TQ Zhang, Y Chen, Y Liu, WH Lin, JW Wang - Nature communications, 2021 - nature.com
Root development relies on the establishment of meristematic tissues that give rise to
distinct cell types that differentiate across defined temporal and spatial gradients. Dissection …
distinct cell types that differentiate across defined temporal and spatial gradients. Dissection …
The prevalence, evolution and chromatin signatures of plant regulatory elements
Chromatin accessibility and modification is a hallmark of regulatory DNA, the study of which
led to the discovery of cis-regulatory elements (CREs). Here, we characterize chromatin …
led to the discovery of cis-regulatory elements (CREs). Here, we characterize chromatin …
Chromatin accessibility profiling methods
Chromatin accessibility, or the physical access to chromatinized DNA, is a widely studied
characteristic of the eukaryotic genome. As active regulatory DNA elements are generally …
characteristic of the eukaryotic genome. As active regulatory DNA elements are generally …
Pangenomics comes of age: from bacteria to plant and animal applications
The pangenome refers to a collection of genomic sequence found in the entire species or
population rather than in a single individual; the sequence can be core, present in all …
population rather than in a single individual; the sequence can be core, present in all …
Comprehensive characterization of three classes of Arabidopsis SWI/SNF chromatin remodelling complexes
J Guo, G Cai, YQ Li, YX Zhang, YN Su, DY Yuan… - Nature Plants, 2022 - nature.com
Although SWI/SNF chromatin remodelling complexes are known to regulate diverse
biological functions in plants, the classification, compositions and functional mechanisms of …
biological functions in plants, the classification, compositions and functional mechanisms of …
The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution
The scarcity of accessible sites that are dynamic or cell type-specific in plants may be due in
part to tissue heterogeneity in bulk studies. To assess the effects of tissue heterogeneity, we …
part to tissue heterogeneity in bulk studies. To assess the effects of tissue heterogeneity, we …
ChIP-Hub provides an integrative platform for exploring plant regulome
Plant genomes encode a complex and evolutionary diverse regulatory grammar that forms
the basis for most life on earth. A wealth of regulome and epigenome data have been …
the basis for most life on earth. A wealth of regulome and epigenome data have been …