Random walk models in the life sciences: including births, deaths and local interactions

MJ Plank, MJ Simpson… - Journal of the Royal …, 2025 - royalsocietypublishing.org
Random walks and related spatial stochastic models have been used in a range of
application areas, including animal and plant ecology, infectious disease epidemiology …

[HTML][HTML] Weak-form latent space dynamics identification

A Tran, X He, DA Messenger, Y Choi… - Computer Methods in …, 2024 - Elsevier
Recent work in data-driven modeling has demonstrated that a weak formulation of model
equations enhances the noise robustness of a wide range of computational methods. In this …

Benchmarking sparse system identification with low-dimensional chaos

AA Kaptanoglu, L Zhang, ZG Nicolaou, U Fasel… - Nonlinear …, 2023 - Springer
Sparse system identification is the data-driven process of obtaining parsimonious differential
equations that describe the evolution of a dynamical system, balancing model complexity …

Neural McKean-Vlasov processes: distributional dependence in diffusion processes

H Yang, A Hasan, Y Ng… - … Conference on Artificial …, 2024 - proceedings.mlr.press
McKean-Vlasov stochastic differential equations (MV-SDEs) provide a mathematical
description of the behavior of an infinite number of interacting particles by imposing a …

Direct estimation of parameters in ODE models using WENDy: Weak-form estimation of nonlinear dynamics

DM Bortz, DA Messenger, V Dukic - Bulletin of Mathematical Biology, 2023 - Springer
We introduce the Weak-form Estimation of Nonlinear Dynamics (WENDy) method for
estimating model parameters for non-linear systems of ODEs. Without relying on any …

Discovering differential governing equations of hysteresis dynamic systems by data-driven sparse regression method

J Qian, X Sun, J Xu, L Cheng - Nonlinear Dynamics, 2024 - Springer
Hysteresis phenomenon widely exists in various metamaterials and smart actuators.
Governing equations can describe and predict the static/dynamic behavior of the systems …

Weak-form inference for hybrid dynamical systems in ecology

D Messenger, G Dwyer, V Dukic - Journal of the Royal …, 2024 - royalsocietypublishing.org
Species subject to predation and environmental threats commonly exhibit variable periods
of population boom and bust over long timescales. Understanding and predicting such …

Coarse-graining Hamiltonian systems using WSINDy

DA Messenger, JW Burby, DM Bortz - Scientific Reports, 2024 - nature.com
Weak form equation learning and surrogate modeling has proven to be computationally
efficient and robust to measurement noise in a wide range of applications including ODE …

Data-driven discovery and extrapolation of parameterized pattern-forming dynamics

ZG Nicolaou, G Huo, Y Chen, SL Brunton, JN Kutz - Physical Review Research, 2023 - APS
Pattern-forming systems can exhibit a diverse array of complex behaviors as external
parameters are varied, enabling a variety of useful functions in biological and engineered …

Learning anisotropic interaction rules from individual trajectories in a heterogeneous cellular population

DA Messenger, GE Wheeler… - Journal of the Royal …, 2022 - royalsocietypublishing.org
Interacting particle system (IPS) models have proven to be highly successful for describing
the spatial movement of organisms. However, it is challenging to infer the interaction rules …