[HTML][HTML] Implementing and testing the multispecies coalescent model: a valuable paradigm for phylogenomics
In recent articles published in Molecular Phylogenetics and Evolution, Mark Springer and
John Gatesy (S&G) present numerous criticisms of recent implementations and testing of the …
John Gatesy (S&G) present numerous criticisms of recent implementations and testing of the …
StarBEAST2 brings faster species tree inference and accurate estimates of substitution rates
Fully Bayesian multispecies coalescent (MSC) methods like* BEAST estimate species trees
from multiple sequence alignments. Today thousands of genes can be sequenced for a …
from multiple sequence alignments. Today thousands of genes can be sequenced for a …
Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life
Much progress has been achieved in disentangling evolutionary relationships among
species in the tree of life, but some taxonomic groups remain difficult to resolve despite …
species in the tree of life, but some taxonomic groups remain difficult to resolve despite …
Reconstructing the backbone of the Saccharomycotina yeast phylogeny using genome-scale data
Understanding the phylogenetic relationships among the yeasts of the subphylum
Saccharomycotina is a prerequisite for understanding the evolution of their metabolisms and …
Saccharomycotina is a prerequisite for understanding the evolution of their metabolisms and …
Water lilies as emerging models for Darwin's abominable mystery
Water lilies are not only highly favored aquatic ornamental plants with cultural and economic
importance but they also occupy a critical evolutionary space that is crucial for …
importance but they also occupy a critical evolutionary space that is crucial for …
[كتاب][B] Computational phylogenetics: an introduction to designing methods for phylogeny estimation
T Warnow - 2018 - books.google.com
A comprehensive account of both basic and advanced material in phylogeny estimation,
focusing on computational and statistical issues. No background in biology or computer …
focusing on computational and statistical issues. No background in biology or computer …
Incomplete lineage sorting in mammalian phylogenomics
The impact of incomplete lineage sorting (ILS) on phylogenetic conflicts among genes, and
the related issue of whether to account for ILS in species tree reconstruction, are matters of …
the related issue of whether to account for ILS in species tree reconstruction, are matters of …
Evaluating methods for phylogenomic analyses, and a new phylogeny for a major frog clade (Hyloidea) based on 2214 loci
Phylogenomic approaches offer a wealth of data, but a bewildering diversity of
methodological choices. These choices can strongly affect the resulting topologies. Here, we …
methodological choices. These choices can strongly affect the resulting topologies. Here, we …
Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats
The rapid diversification of Myotis bats into more than 100 species is one of the most
extensive mammalian radiations available for study. Efforts to understand relationships …
extensive mammalian radiations available for study. Efforts to understand relationships …
Conserved nonexonic elements: a novel class of marker for phylogenomics
Noncoding markers have a particular appeal as tools for phylogenomic analysis because, at
least in vertebrates, they appear less subject to strong variation in GC content among …
least in vertebrates, they appear less subject to strong variation in GC content among …