Fungal evolution: major ecological adaptations and evolutionary transitions

MA Naranjo‐Ortiz, T Gabaldón - Biological Reviews, 2019 - Wiley Online Library
Fungi are a highly diverse group of heterotrophic eukaryotes characterized by the absence
of phagotrophy and the presence of a chitinous cell wall. While unicellular fungi are far from …

Evolution and genome architecture in fungal plant pathogens

M Möller, EH Stukenbrock - Nature Reviews Microbiology, 2017 - nature.com
The fungal kingdom comprises some of the most devastating plant pathogens. Sequencing
the genomes of fungal pathogens has shown a remarkable variability in genome size and …

Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement

K Gaurav, S Arora, P Silva, J Sánchez-Martín… - Nature …, 2022 - nature.com
Aegilops tauschii, the diploid wild progenitor of the D subgenome of bread wheat, is a
reservoir of genetic diversity for improving bread wheat performance and environmental …

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

J Sperschneider, PN Dodds… - Molecular plant …, 2018 - Wiley Online Library
Plant‐pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …

Fungal effectors and plant susceptibility

L Lo Presti, D Lanver, G Schweizer… - Annual review of …, 2015 - annualreviews.org
Plants can be colonized by fungi that have adopted highly diverse lifestyles, ranging from
symbiotic to necrotrophic. Colonization is governed in all systems by hundreds of secreted …

The two-speed genomes of filamentous pathogens: waltz with plants

S Dong, S Raffaele, S Kamoun - Current opinion in genetics & …, 2015 - Elsevier
Fungi and oomycetes include deep and diverse lineages of eukaryotic plant pathogens. The
last 10 years have seen the sequencing of the genomes of a multitude of species of these so …

Rapid emergence of pathogens in agro-ecosystems: global threats to agricultural sustainability and food security

BA McDonald, EH Stukenbrock - … Transactions of the …, 2016 - royalsocietypublishing.org
Agricultural ecosystems are composed of genetically depauperate populations of crop
plants grown at a high density and over large spatial scales, with the regional composition of …

EffectorP: predicting fungal effector proteins from secretomes using machine learning

J Sperschneider, DM Gardiner, PN Dodds… - New …, 2016 - Wiley Online Library
Eukaryotic filamentous plant pathogens secrete effector proteins that modulate the host cell
to facilitate infection. Computational effector candidate identification and subsequent …

Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen

L Faino, MF Seidl, X Shi-Kunne, M Pauper… - Genome …, 2016 - genome.cshlp.org
Genomic plasticity enables adaptation to changing environments, which is especially
relevant for pathogens that engage in “arms races” with their hosts. In many pathogens …

Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism

PD Spanu, JC Abbott, J Amselem, TA Burgis… - Science, 2010 - science.org
Powdery mildews are phytopathogens whose growth and reproduction are entirely
dependent on living plant cells. The molecular basis of this life-style, obligate biotrophy …