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Fungal evolution: major ecological adaptations and evolutionary transitions
Fungi are a highly diverse group of heterotrophic eukaryotes characterized by the absence
of phagotrophy and the presence of a chitinous cell wall. While unicellular fungi are far from …
of phagotrophy and the presence of a chitinous cell wall. While unicellular fungi are far from …
Evolution and genome architecture in fungal plant pathogens
The fungal kingdom comprises some of the most devastating plant pathogens. Sequencing
the genomes of fungal pathogens has shown a remarkable variability in genome size and …
the genomes of fungal pathogens has shown a remarkable variability in genome size and …
Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement
Aegilops tauschii, the diploid wild progenitor of the D subgenome of bread wheat, is a
reservoir of genetic diversity for improving bread wheat performance and environmental …
reservoir of genetic diversity for improving bread wheat performance and environmental …
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
Plant‐pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …
Fungal effectors and plant susceptibility
L Lo Presti, D Lanver, G Schweizer… - Annual review of …, 2015 - annualreviews.org
Plants can be colonized by fungi that have adopted highly diverse lifestyles, ranging from
symbiotic to necrotrophic. Colonization is governed in all systems by hundreds of secreted …
symbiotic to necrotrophic. Colonization is governed in all systems by hundreds of secreted …
The two-speed genomes of filamentous pathogens: waltz with plants
Fungi and oomycetes include deep and diverse lineages of eukaryotic plant pathogens. The
last 10 years have seen the sequencing of the genomes of a multitude of species of these so …
last 10 years have seen the sequencing of the genomes of a multitude of species of these so …
Rapid emergence of pathogens in agro-ecosystems: global threats to agricultural sustainability and food security
Agricultural ecosystems are composed of genetically depauperate populations of crop
plants grown at a high density and over large spatial scales, with the regional composition of …
plants grown at a high density and over large spatial scales, with the regional composition of …
EffectorP: predicting fungal effector proteins from secretomes using machine learning
Eukaryotic filamentous plant pathogens secrete effector proteins that modulate the host cell
to facilitate infection. Computational effector candidate identification and subsequent …
to facilitate infection. Computational effector candidate identification and subsequent …
Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen
Genomic plasticity enables adaptation to changing environments, which is especially
relevant for pathogens that engage in “arms races” with their hosts. In many pathogens …
relevant for pathogens that engage in “arms races” with their hosts. In many pathogens …
Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism
Powdery mildews are phytopathogens whose growth and reproduction are entirely
dependent on living plant cells. The molecular basis of this life-style, obligate biotrophy …
dependent on living plant cells. The molecular basis of this life-style, obligate biotrophy …