Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
Toward a global reference database of COI barcodes for marine zooplankton
Abstract Characterization of species diversity of zooplankton is key to understanding,
assessing, and predicting the function and future of pelagic ecosystems throughout the …
assessing, and predicting the function and future of pelagic ecosystems throughout the …
Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding
MI Brandt, B Trouche, L Quintric… - Molecular Ecology …, 2021 - Wiley Online Library
Environmental DNA metabarcoding is a powerful tool for studying biodiversity. However,
bioinformatic approaches need to adjust to the diversity of taxonomic compartments targeted …
bioinformatic approaches need to adjust to the diversity of taxonomic compartments targeted …
New high-tech flexible networks for the monitoring of deep-sea ecosystems
Increasing interest in the acquisition of biotic and abiotic resources from within the deep sea
(eg, fisheries, oil–gas extraction, and mining) urgently imposes the development of novel …
(eg, fisheries, oil–gas extraction, and mining) urgently imposes the development of novel …
Eutrophication decrease compositional dissimilarity in freshwater plankton communities
Y Li, M Geng, J Yu, Y Du, M Xu, W Zhang… - Science of the Total …, 2022 - Elsevier
Human activities, such as land use change and eutrophication, threaten freshwater
biodiversity and ecosystem function. In this study, we examined both the α-and β-diversity of …
biodiversity and ecosystem function. In this study, we examined both the α-and β-diversity of …
Marine biomonitoring with eDNA: Can metabarcoding of water samples cut it as a tool for surveying benthic communities?
In the marine realm, biomonitoring using environmental DNA (eDNA) of benthic
communities requires destructive direct sampling or the setting‐up of settlement structures …
communities requires destructive direct sampling or the setting‐up of settlement structures …
From metabarcoding to metaphylogeography: separating the wheat from the chaff
Metabarcoding is by now a well‐established method for biodiversity assessment in
terrestrial, freshwater, and marine environments. Metabarcoding data sets are usually used …
terrestrial, freshwater, and marine environments. Metabarcoding data sets are usually used …
Multi-marker DNA metabarcoding for precise species identification in ichthyoplankton samples
Ichthyoplankton monitoring is crucial for stock assessments, offering insights into spawning
grounds, stock size, seasons, recruitment, and changes in regional ichthyofauna. This study …
grounds, stock size, seasons, recruitment, and changes in regional ichthyofauna. This study …
DNA metabarcoding marker choice skews perception of marine eukaryotic biodiversity
DNA metabarcoding is an increasingly popular technique to investigate biodiversity;
however, many methodological unknowns remain, especially concerning the biases …
however, many methodological unknowns remain, especially concerning the biases …
Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA
Despite representing one of the largest biomes on earth, biodiversity of the deep seafloor is
still poorly known. Environmental DNA metabarcoding offers prospects for fast inventories …
still poorly known. Environmental DNA metabarcoding offers prospects for fast inventories …