A roadmap for the human developmental cell atlas

M Haniffa, D Taylor, S Linnarsson, BJ Aronow… - Nature, 2021 - nature.com
Abstract The Human Developmental Cell Atlas (HDCA) initiative, which is part of the Human
Cell Atlas, aims to create a comprehensive reference map of cells during development. This …

Tissue clearing

DS Richardson, W Guan, K Matsumoto, C Pan… - Nature Reviews …, 2021 - nature.com
Tissue clearing of gross anatomical samples was first described more than a century ago
and has only recently found widespread use in the field of microscopy. This renaissance has …

Deterministic reprogramming of neutrophils within tumors

MSF Ng, I Kwok, L Tan, C Shi, D Cerezo-Wallis, Y Tan… - Science, 2024 - science.org
Neutrophils are increasingly recognized as key players in the tumor immune response and
are associated with poor clinical outcomes. Despite recent advances characterizing the …

Cell2location maps fine-grained cell types in spatial transcriptomics

V Kleshchevnikov, A Shmatko, E Dann… - Nature …, 2022 - nature.com
Spatial transcriptomic technologies promise to resolve cellular wiring diagrams of tissues in
health and disease, but comprehensive map** of cell types in situ remains a challenge …

CODA: quantitative 3D reconstruction of large tissues at cellular resolution

AL Kiemen, AM Braxton, MP Grahn, KS Han, JM Babu… - Nature …, 2022 - nature.com
A central challenge in biology is obtaining high-content, high-resolution information while
analyzing tissue samples at volumes relevant to disease progression. We address this here …

Imaging intact human organs with local resolution of cellular structures using hierarchical phase-contrast tomography

CL Walsh, P Tafforeau, WL Wagner, DJ Jafree… - Nature …, 2021 - nature.com
Imaging intact human organs from the organ to the cellular scale in three dimensions is a
goal of biomedical imaging. To meet this challenge, we developed hierarchical phase …

Whole-body cellular map** in mouse using standard IgG antibodies

H Mai, J Luo, L Hoeher, R Al-Maskari, I Horvath… - Nature …, 2024 - nature.com
Whole-body imaging techniques play a vital role in exploring the interplay of physiological
systems in maintaining health and driving disease. We introduce wildDISCO, a new …

clDice-a novel topology-preserving loss function for tubular structure segmentation

S Shit, JC Paetzold, A Sekuboyina… - Proceedings of the …, 2021 - openaccess.thecvf.com
Accurate segmentation of tubular, network-like structures, such as vessels, neurons, or
roads, is relevant to many fields of research. For such structures, the topology is their most …

Innervation of nociceptor neurons in the spleen promotes germinal center responses and humoral immunity

M Wu, G Song, J Li, Z Song, B Zhao, L Liang, W Li… - Cell, 2024 - cell.com
Peripheral sensory neurons widely innervate various tissues to continuously monitor and
respond to environmental stimuli. Whether peripheral sensory neurons innervate the spleen …

[HTML][HTML] Spatial proteomics in three-dimensional intact specimens

HS Bhatia, AD Brunner, F Öztürk, S Kapoor, Z Rong… - Cell, 2022 - cell.com
Spatial molecular profiling of complex tissues is essential to investigate cellular function in
physiological and pathological states. However, methods for molecular analysis of large …