Genome dynamics during experimental evolution

JE Barrick, RE Lenski - Nature Reviews Genetics, 2013 - nature.com
Evolutionary changes in organismal traits may occur either gradually or suddenly. However,
until recently, there has been little direct information about how phenotypic changes are …

Comparison of 61 Sequenced Escherichia coli Genomes

O Lukjancenko, TM Wassenaar, DW Ussery - Microbial ecology, 2010 - Springer
Escherichia coli is an important component of the biosphere and is an ideal model for
studies of processes involved in bacterial genome evolution. Sixty-one publically available …

Discovery of the curcumin metabolic pathway involving a unique enzyme in an intestinal microorganism

A Hassaninasab, Y Hashimoto… - Proceedings of the …, 2011 - National Acad Sciences
Polyphenol curcumin, a yellow pigment, derived from the rhizomes of a plant (Curcuma
longa Linn) is a natural antioxidant exhibiting a variety of pharmacological activities and …

When the most potent combination of antibiotics selects for the greatest bacterial load: the smile-frown transition

R Pena-Miller, D Laehnemann, G Jansen… - PLoS …, 2013 - journals.plos.org
Conventional wisdom holds that the best way to treat infection with antibiotics is to 'hit early
and hit hard'. A favoured strategy is to deploy two antibiotics that produce a stronger effect in …

Chaperone-Usher Fimbriae of Escherichia coli

DJ Wurpel, SA Beatson, M Totsika, NK Petty… - PloS one, 2013 - journals.plos.org
Chaperone-usher (CU) fimbriae are adhesive surface organelles common to many Gram-
negative bacteria. Escherichia coli genomes contain a large variety of characterised and …

The Complete Genome Sequence of Escherichia coli EC958: A High Quality Reference Sequence for the Globally Disseminated Multidrug Resistant E. coli O25b:H4 …

BM Forde, NL Ben Zakour, M Stanton-Cook, MD Phan… - PloS one, 2014 - journals.plos.org
Escherichia coli ST131 is now recognised as a leading contributor to urinary tract and
bloodstream infections in both community and clinical settings. Here we present the …

Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli

X Didelot, G Méric, D Falush, AE Darling - BMC genomics, 2012 - Springer
Background Escherichia coli is an important species of bacteria that can live as a harmless
inhabitant of the guts of many animals, as a pathogen causing life-threatening conditions or …

Employing bacterial mutations for the elucidation of photo-Fenton disinfection: focus on the intracellular and extracellular inactivation mechanisms induced by UVA …

L Feng, C Peillex-Delphe, C Lü, D Wang, S Giannakis… - Water research, 2020 - Elsevier
The bacterial inactivation mechanisms by solar light and the photo-Fenton process is still a
matter of debate. In this study, we bring evidence towards the elucidation of the mechanisms …

A shifting mutational landscape in 6 nutritional states: Stress-induced mutagenesis as a series of distinct stress input–mutation output relationships

RP Maharjan, T Ferenci - PLoS biology, 2017 - journals.plos.org
Environmental stresses increase genetic variation in bacteria, plants, and human cancer
cells. The linkage between various environments and mutational outcomes has not been …

Derivation of Escherichia coli O157:H7 from Its O55:H7 Precursor

Z Zhou, X Li, B Liu, L Beutin, J Xu, Y Ren, L Feng… - PloS one, 2010 - journals.plos.org
There are 29 E. coli genome sequences available, mostly related to studies of species
diversity or mode of pathogenicity, including two genomes of the well-known O157: H7 …