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Reverse engineering and identification in systems biology: strategies, perspectives and challenges
The interplay of mathematical modelling with experiments is one of the central elements in
systems biology. The aim of reverse engineering is to infer, analyse and understand …
systems biology. The aim of reverse engineering is to infer, analyse and understand …
A geometric approach to the global attractor conjecture
This paper introduces the class of strongly endotactic networks, a subclass of the endotactic
networks introduced by Craciun, Nazarov, and Pantea. The main result states that the global …
networks introduced by Craciun, Nazarov, and Pantea. The main result states that the global …
[КНИГА][B] Reaction kinetics: exercises, programs and theorems
Origin More than a quarter of a century ago the senior author (JT) published a book with
Péter Érdi on the mathematical models of chemical reactions. 1 Before and after writing that …
Péter Érdi on the mathematical models of chemical reactions. 1 Before and after writing that …
Inference of complex biological networks: distinguishability issues and optimization-based solutions
Background The inference of biological networks from high-throughput data has received
huge attention during the last decade and can be considered an important problem class in …
huge attention during the last decade and can be considered an important problem class in …
Identifiability of large nonlinear biochemical networks
AF Villaverde, A Barreiro - 2016 - repositorium.uminho.pt
Dynamic models formulated as a set of ordinary differential equations provide a detailed
description of the time-evolution of a system. Such models of (bio) chemical reaction …
description of the time-evolution of a system. Such models of (bio) chemical reaction …
An efficient characterization of complex-balanced, detailed-balanced, and weakly reversible systems
Very often, models in biology, chemistry, physics, and engineering are systems of
polynomial or power-law ordinary differential equations, arising from a reaction network …
polynomial or power-law ordinary differential equations, arising from a reaction network …
[PDF][PDF] Three waves of chemical dynamics
Three Waves of Chemical Dynamics Page 1 “gorbanyablprefaceMMNP1” — 2015/8/10 —
20:32 — page 1 — #1 ✐ ✐ ✐ ✐ Math. Model. Nat. Phenom. Vol. 10, No. 5, 2015, pp. 1–5 DOI …
20:32 — page 1 — #1 ✐ ✐ ✐ ✐ Math. Model. Nat. Phenom. Vol. 10, No. 5, 2015, pp. 1–5 DOI …
Computing weakly reversible linearly conjugate chemical reaction networks with minimal deficiency
Mass-action kinetics is frequently used in systems biology to model the behavior of
interacting chemical species. Many important dynamical properties are known to hold for …
interacting chemical species. Many important dynamical properties are known to hold for …
Linear conjugacy of chemical reaction networks
MD Johnston, D Siegel - Journal of mathematical chemistry, 2011 - Springer
Under suitable assumptions, the dynamic behaviour of a chemical reaction network is
governed by an autonomous set of polynomial ordinary differential equations over …
governed by an autonomous set of polynomial ordinary differential equations over …
A linear programming approach to weak reversibility and linear conjugacy of chemical reaction networks
A numerically effective procedure for determining weakly reversible chemical reaction
networks that are linearly conjugate to a known reaction network is proposed in this paper …
networks that are linearly conjugate to a known reaction network is proposed in this paper …