flDPnn: Accurate intrinsic disorder prediction with putative propensities of disorder functions
Identification of intrinsic disorder in proteins relies in large part on computational predictors,
which demands that their accuracy should be high. Since intrinsic disorder carries out a …
which demands that their accuracy should be high. Since intrinsic disorder carries out a …
Modeling protein quaternary structure of homo-and hetero-oligomers beyond binary interactions by homology
Cellular processes often depend on interactions between proteins and the formation of
macromolecular complexes. The impairment of such interactions can lead to deregulation of …
macromolecular complexes. The impairment of such interactions can lead to deregulation of …
Exceptionally abundant exceptions: comprehensive characterization of intrinsic disorder in all domains of life
Recent years witnessed increased interest in intrinsically disordered proteins and regions.
These proteins and regions are abundant and possess unique structural features and a …
These proteins and regions are abundant and possess unique structural features and a …
UniRef: comprehensive and non-redundant UniProt reference clusters
Motivation: Redundant protein sequences in biological databases hinder sequence
similarity searches and make interpretation of search results difficult. Clustering of protein …
similarity searches and make interpretation of search results difficult. Clustering of protein …
Predicting functionally important residues from sequence conservation
JA Capra, M Singh - Bioinformatics, 2007 - academic.oup.com
Motivation: All residues in a protein are not equally important. Some are essential for the
proper structure and function of the protein, whereas others can be readily replaced …
proper structure and function of the protein, whereas others can be readily replaced …
Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure
Identifying a protein's functional sites is an important step towards characterizing its
molecular function. Numerous structure-and sequence-based methods have been …
molecular function. Numerous structure-and sequence-based methods have been …
[HTML][HTML] Geminiviral C4/AC4 proteins: An emerging component of the viral arsenal against plant defence
Virus infection triggers a plethora of defence reactions in plants to incapacitate the intruder.
Viruses, in turn, have added additional functions to their genes so that they acquire …
Viruses, in turn, have added additional functions to their genes so that they acquire …
Precise prediction of phase-separation key residues by machine learning
J Sun, J Qu, C Zhao, X Zhang, X Liu, J Wang… - Nature …, 2024 - nature.com
Understanding intracellular phase separation is crucial for deciphering transcriptional
control, cell fate transitions, and disease mechanisms. However, the key residues, which …
control, cell fate transitions, and disease mechanisms. However, the key residues, which …
DescribePROT: database of amino acid-level protein structure and function predictions
We present DescribePROT, the database of predicted amino acid-level descriptors of
structure and function of proteins. DescribePROT delivers a comprehensive collection of 13 …
structure and function of proteins. DescribePROT delivers a comprehensive collection of 13 …
Prediction of protein-protein interaction sites in intrinsically disordered proteins
R Chen, X Li, Y Yang, X Song, C Wang… - Frontiers in Molecular …, 2022 - frontiersin.org
Intrinsically disordered proteins (IDPs) participate in many biological processes by
interacting with other proteins, including the regulation of transcription, translation, and the …
interacting with other proteins, including the regulation of transcription, translation, and the …