Robustness and innovation in synthetic genotype networks

J Santos-Moreno, E Tasiudi… - Nature …, 2023 - nature.com
Genotype networks are sets of genotypes connected by small mutational changes that share
the same phenotype. They facilitate evolutionary innovation by enabling the exploration of …

Understanding developmental system drift

Á McColgan, J DiFrisco - Development, 2024 - journals.biologists.com
Developmental system drift (DSD) occurs when the genetic basis for homologous traits
diverges over time despite conservation of the phenotype. In this Review, we examine the …

Patterns of Fitness and Gene Expression Epistasis Generated by Beneficial Mutations in the rho and rpoB Genes of Escherichia coli during High-Temperature …

A González-González, TN Batarseh… - Molecular Biology …, 2024 - academic.oup.com
Epistasis is caused by genetic interactions among mutations that affect fitness. To
characterize properties and potential mechanisms of epistasis, we engineered eight double …

Competition-driven eco-evolutionary feedback reshapes bacteriophage lambda's fitness landscape and enables speciation

MB Doud, A Gupta, V Li, SJ Medina… - Nature …, 2024 - nature.com
A major challenge in evolutionary biology is explaining how populations navigate rugged
fitness landscapes without getting trapped on local optima. One idea illustrated by adaptive …

Morphogens in the evolution of size, shape and patterning

LS Mosby, AE Bowen, Z Hadjivasiliou - Development, 2024 - journals.biologists.com
Much of the striking diversity of life on Earth has arisen from variations in the way that the
same molecules and networks operate during development to shape and pattern tissues …

Data-driven discovery of the interplay between genetic and environmental factors in bacterial growth

H Aida, BW Ying - Communications Biology, 2024 - nature.com
A complex interplay of genetic and environmental factors influences bacterial growth.
Understanding these interactions is crucial for insights into complex living systems. This …

Two distinct regulatory systems control pulcherrimin biosynthesis in Bacillus subtilis

NL Fernandez, LA Simmons - PLoS Genetics, 2024 - journals.plos.org
Regulation of transcription is a fundamental process that allows bacteria to respond to
external stimuli with appropriate timing and magnitude of response. In the soil bacterium …

A direct experimental test of Ohno's hypothesis

L Mihajlovic, BR Iyengar, F Baier, I Barbier… - bioRxiv, 2023 - biorxiv.org
Gene duplication drives evolution by providing raw material for proteins with novel functions.
The oldest and historically most influential hypothesis about the evolutionary fate and …

[HTML][HTML] Global regulators enable bacterial adaptation to a phenotypic trade-off

M Deyell, V Opuu, AD Griffiths, SJ Tans, P Nghe - iScience, 2025 - cell.com
Cellular fitness depends on multiple phenotypes that must be balanced during evolutionary
adaptation. For instance, coordinating growth and motility is critical for microbial colonization …

The distribution of fitness effects during adaptive walks using a simple genetic network

NLV O'Brien, B Holland, J Engelstädter… - PLoS …, 2024 - journals.plos.org
The tempo and mode of adaptation depends on the availability of beneficial alleles. Genetic
interactions arising from gene networks can restrict this availability. However, the extent to …