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Estimating morphological diversity and tempo with discrete character-taxon matrices: implementation, challenges, progress, and future directions
GT Lloyd - Biological Journal of the Linnean Society, 2016 - academic.oup.com
Discrete character-taxon matrices are increasingly being used in an attempt to understand
the pattern and tempo of morphological evolution; however, methodological sophistication …
the pattern and tempo of morphological evolution; however, methodological sophistication …
Integrating fossil observations into phylogenetics using the fossilized birth–death model
Over the past decade, a new set of methods for estimating dated trees has emerged.
Originally referred to as the fossilized birth–death (FBD) process, this single model has …
Originally referred to as the fossilized birth–death (FBD) process, this single model has …
Rates of dinosaur body mass evolution indicate 170 million years of sustained ecological innovation on the avian stem lineage
Large-scale adaptive radiations might explain the runaway success of a minority of extant
vertebrate clades. This hypothesis predicts, among other things, rapid rates of morphological …
vertebrate clades. This hypothesis predicts, among other things, rapid rates of morphological …
paleotree: an R package for paleontological and phylogenetic analyses of evolution
DW Bapst - Methods in Ecology and Evolution, 2012 - Wiley Online Library
paleotree is a library of functions for the R statistical computing environment dedicated to
analyses that combine paleontological and phylogenetic data sets, particularly the time …
analyses that combine paleontological and phylogenetic data sets, particularly the time …
[HTML][HTML] Gradual assembly of avian body plan culminated in rapid rates of evolution across the dinosaur-bird transition
The evolution of birds from theropod dinosaurs was one of the great evolutionary transitions
in the history of life [1–22]. The macroevolutionary tempo and mode of this transition is …
in the history of life [1–22]. The macroevolutionary tempo and mode of this transition is …
strap: an R package for plotting phylogenies against stratigraphy and assessing their stratigraphic congruence
Abstract strap (S tratigraphic T ree A nalysis for P alaeontology) is a new package for the
freely available statistical programming language R designed to perform three main …
freely available statistical programming language R designed to perform three main …
Confluence, synnovation, and depauperons in plant diversification
We review the empirical phylogenetic literature on plant diversification, highlighting
challenges in separating the effects of speciation and extinction, in specifying diversification …
challenges in separating the effects of speciation and extinction, in specifying diversification …
A new method for testing evolutionary rate variation and shifts in phenotypic evolution
S Castiglione, G Tesone, M Piccolo… - Methods in Ecology …, 2018 - Wiley Online Library
Quantifying phenotypic evolutionary rates and their variation across phylogenetic trees is a
major issue in evolutionary biology. A number of phylogenetic comparative methods (PCM …
major issue in evolutionary biology. A number of phylogenetic comparative methods (PCM …
An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiology
Recent innovations in phylogenetic comparative methods (PCMs) have spurred a
renaissance of research into the causes and consequences of large‐scale patterns of …
renaissance of research into the causes and consequences of large‐scale patterns of …
Five hundred million years of extinction and recovery: a Phanerozoic survey of large‐scale diversity patterns in fishes
Fishes include more than half of all living animals with backbones, but large‐scale
palaeobiological patterns in this assemblage have not received the same attention as those …
palaeobiological patterns in this assemblage have not received the same attention as those …