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Textual data compression in computational biology: a synopsis
R Giancarlo, D Scaturro, F Utro - Bioinformatics, 2009 - academic.oup.com
Motivation: Textual data compression, and the associated techniques coming from
information theory, are often perceived as being of interest for data communication and …
information theory, are often perceived as being of interest for data communication and …
The evolution of isochore patterns in vertebrate genomes
M Costantini, R Cammarano, G Bernardi - BMC genomics, 2009 - Springer
Background Previous work from our laboratory showed that (i) vertebrate genomes are
mosaics of isochores, typically megabase-size DNA segments that are fairly homogeneous …
mosaics of isochores, typically megabase-size DNA segments that are fairly homogeneous …
Segmentation of time series with long-range fractal correlations
P Bernaola-Galván, JL Oliver, M Hackenberg… - The European Physical …, 2012 - Springer
Segmentation is a standard method of data analysis to identify change-points dividing a
nonstationary time series into homogeneous segments. However, for long-range fractal …
nonstationary time series into homogeneous segments. However, for long-range fractal …
The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment
Integrative analyses of genomic, epigenomic and transcriptomic features for human and
various model organisms have revealed that many such features are nonrandomly …
various model organisms have revealed that many such features are nonrandomly …
Comparative testing of DNA segmentation algorithms using benchmark simulations
Numerous segmentation methods for the detection of compositionally homogeneous
domains within genomic sequences have been proposed. Unfortunately, these methods …
domains within genomic sequences have been proposed. Unfortunately, these methods …
Identifying compositionally homogeneous and nonhomogeneous domains within the human genome using a novel segmentation algorithm
It has been suggested that the mammalian genome is composed mainly of long
compositionally homogeneous domains. Such domains are frequently identified using …
compositionally homogeneous domains. Such domains are frequently identified using …
Finding segmentations of sequences
E Bingham - Inductive databases and constraint-based data mining, 2010 - Springer
We describe a collection of approaches to inductive querying systems for data that contain
segmental structure. The main focus in this chapter is on work done in Helsinki area in 2004 …
segmental structure. The main focus in this chapter is on work done in Helsinki area in 2004 …
Towards automated symptoms assessment in mental health
M Osipov - ar** methods agree on the
isochore classification of about two-thirds of the human DNA, they produce significantly …
isochore classification of about two-thirds of the human DNA, they produce significantly …
A new method for splice site prediction based on the sequence patterns of splicing signals and regulatory elements
It is of significance for splice site prediction to develop novel algorithms that combine the
sequence patterns of regulatory elements such as enhancers and silencers with the patterns …
sequence patterns of regulatory elements such as enhancers and silencers with the patterns …