Plant antimicrobial peptides: state of the art, in silico prediction and perspectives in the omics era
CA Santos-Silva, L Zupin… - … and Biology Insights, 2020 - journals.sagepub.com
Even before the perception or interaction with pathogens, plants rely on constitutively
guardian molecules, often specific to tissue or stage, with further expression after contact …
guardian molecules, often specific to tissue or stage, with further expression after contact …
Bioinformatic prediction of plant–pathogenicity effector proteins of fungi
Highlights•Review of current methods in fungal plant pathogenicity effector protein
prediction.•Recent advances have been made in structural and machine learning-based …
prediction.•Recent advances have been made in structural and machine learning-based …
KNOTTIN: the database of inhibitor cystine knot scaffold after 10 years, toward a systematic structure modeling
Knottins, or inhibitor cystine knots (ICKs), are ultra-stable miniproteins with multiple
applications in drug design and medical imaging. These widespread and functionally …
applications in drug design and medical imaging. These widespread and functionally …
Current and prospective computational approaches and challenges for develo** COVID-19 vaccines
Abstract SARS-CoV-2, which causes COVID-19, was first identified in humans in late 2019
and is a coronavirus which is zoonotic in origin. As it spread around the world there has …
and is a coronavirus which is zoonotic in origin. As it spread around the world there has …
AB-Amy: machine learning aided amyloidogenic risk prediction of therapeutic antibody light chains
Y Zhou, Z Huang, Y Gou, S Liu, W Yang… - Antibody …, 2023 - academic.oup.com
Over 120 FDA-approved antibody-based therapeutics are used to treat a variety of diseases.
However, many candidates could fail because of unfavorable physicochemical properties …
However, many candidates could fail because of unfavorable physicochemical properties …
Supercomputing leverages quantum machine learning and Grover's algorithm
The complexity of searching algorithms in classical computing is a classic problem and a
research area. Quantum computers and quantum algorithms can efficiently compute some …
research area. Quantum computers and quantum algorithms can efficiently compute some …
Application of kNN and SVM to predict the prognosis of advanced schistosomiasis
X Zhou, H Wang, C Xu, L Peng, F Xu, L Lian… - Parasitology …, 2022 - Springer
Predictive models for prognosis of small sample advanced schistosomiasis patients have
not been well studied. We aimed to construct prognostic predictive models of small sample …
not been well studied. We aimed to construct prognostic predictive models of small sample …
Protein classification using modified n-grams and skip-grams
Motivation Classification by supervised machine learning greatly facilitates the annotation of
protein characteristics from their primary sequence. However, the feature generation step in …
protein characteristics from their primary sequence. However, the feature generation step in …
Multiple Classes of Antimicrobial Peptides in Amaranthus tricolor Revealed by Prediction, Proteomics, and Mass Spectrometric Characterization
Traditional medicinal plants are rich reservoirs of antimicrobial agents, including
antimicrobial peptides (AMPs). Advances in genomic sequencing, in silico AMP predictions …
antimicrobial peptides (AMPs). Advances in genomic sequencing, in silico AMP predictions …
Making plants into cost-effective bioreactors for highly active antimicrobial peptides
As antibiotic-resistant bacterial pathogens become an ever-increasing concern,
antimicrobial peptides (AMPs) have grown increasingly attractive as alternatives. Potentially …
antimicrobial peptides (AMPs) have grown increasingly attractive as alternatives. Potentially …