Interfacing machine learning and microbial omics: a promising means to address environmental challenges

JMWR McElhinney, MK Catacutan, A Mawart… - Frontiers in …, 2022 - frontiersin.org
Microbial communities are ubiquitous and carry an exceptionally broad metabolic capability.
Upon environmental perturbation, microbes are also amongst the first natural responsive …

Distribution of sediment microbial communities and their relationship with surrounding environmental factors in a typical rural river, Southwest China

C Yang, Z Zeng, H Zhang, D Gao, Y Wang… - … Science and Pollution …, 2022 - Springer
With rapid urbanization and industrialization, rural rivers in China are facing deterioration in
water quality and ecosystem health. Microorganisms living in river sediments are involved in …

[HTML][HTML] Is there any biological insight (or respite) for insects exposed to plastics? Measuring the impact on an insects central carbon metabolism when exposed to a …

DJ Beale, RM Shah, A Marcora, A Hulthen… - Science of the Total …, 2022 - Elsevier
Insects used to treat organic waste streams and produce valuable protein products are
increasingly exposed to plastic contaminated source material assimilating plastic carbon …

Current status of omics in biological quality elements for freshwater biomonitoring

J Machuca-Sepúlveda, J Miranda, N Lefin, A Pedroso… - Biology, 2023 - mdpi.com
Simple Summary Freshwater ecosystems face various threats, especially in recent decades,
that pose unprecedented challenges to human health, water supply, agriculture, forestry …

Omics-based ecosurveillance for the assessment of ecosystem function, health, and resilience

DJ Beale, OAH Jones, U Bose… - Emerging topics in …, 2022 - portlandpress.com
Current environmental monitoring efforts often focus on known, regulated contaminants
ignoring the potential effects of unmeasured compounds and/or environmental factors …

Microbiome–metabolite linkages drive greenhouse gas dynamics over a permafrost thaw gradient

V Freire-Zapata, H Holland-Moritz, DR Cronin… - Nature …, 2024 - nature.com
Interactions between microbiomes and metabolites play crucial roles in the environment, yet
how these interactions drive greenhouse gas emissions during ecosystem changes remains …

[HTML][HTML] The importance of blue carbon as a food source to oysters (Saccostrea cucullata) inside a tropical pristine Australian estuary

D Bearham, D Gorman, MJ McLaughlin, D Liu… - Estuarine, Coastal and …, 2023 - Elsevier
This study investigated the importance of blue carbon (carbon captured from the atmosphere
by algae, mangrove and seagrass leaves) as a component of particulate organic matter …

Multiple-biomarkers show the importance of blue carbon to commercially important fishery species

D Gorman, DJ Beale, J Crosswell… - Science of the Total …, 2023 - Elsevier
Coastal blue carbon ecosystems (BCE) support nearshore food webs and provide habitat for
many commercially important fish and crustacean species. However, the complex links …

Estimating taxonomic and functional structure along a tropical estuary: linking metabolic traits and aspects of ecosystem functioning

HA Levipan, LF Opazo, S Arenas-Uribe… - Microbiology …, 2024 - journals.asm.org
Microbial life forms are among the most ubiquitous on Earth, yet many remain understudied
in Caribbean estuaries. We report on the prokaryote community composition of the Urabá …