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Named entity recognition and relation detection for biomedical information extraction
The number of scientific publications in the literature is steadily growing, containing our
knowledge in the biomedical, health, and clinical sciences. Since there is currently no …
knowledge in the biomedical, health, and clinical sciences. Since there is currently no …
Deep learning methods for biomedical named entity recognition: a survey and qualitative comparison
The biomedical literature is growing rapidly, and the extraction of meaningful information
from the large amount of literature is increasingly important. Biomedical named entity …
from the large amount of literature is increasingly important. Biomedical named entity …
Advancing entity recognition in biomedicine via instruction tuning of large language models
Abstract Motivation Large Language Models (LLMs) have the potential to revolutionize the
field of Natural Language Processing, excelling not only in text generation and reasoning …
field of Natural Language Processing, excelling not only in text generation and reasoning …
A review on electronic health record text-mining for biomedical name entity recognition in healthcare domain
Biomedical-named entity recognition (bNER) is critical in biomedical informatics. It identifies
biomedical entities with special meanings, such as people, places, and organizations, as …
biomedical entities with special meanings, such as people, places, and organizations, as …
HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition
Named entity recognition (NER) is an important step in biomedical information extraction
pipelines. Tools for NER should be easy to use, cover multiple entity types, be highly …
pipelines. Tools for NER should be easy to use, cover multiple entity types, be highly …
Biomedical named entity recognition with multilingual BERT
We present the approach of the Turku NLP group to the PharmaCoNER task on Spanish
biomedical named entity recognition. We apply a CRF-based baseline approach and …
biomedical named entity recognition. We apply a CRF-based baseline approach and …
[HTML][HTML] The new version of the ANDDigest tool with improved AI-based short names recognition
TV Ivanisenko, PS Demenkov, NA Kolchanov… - International Journal of …, 2022 - mdpi.com
The body of scientific literature continues to grow annually. Over 1.5 million abstracts of
biomedical publications were added to the PubMed database in 2021. Therefore …
biomedical publications were added to the PubMed database in 2021. Therefore …
Cyclener: an unsupervised training approach for named entity recognition
Named Entity Recognition (NER) is a crucial natural language understanding task for many
down-stream tasks such as question answering and retrieval. Despite significant progress in …
down-stream tasks such as question answering and retrieval. Despite significant progress in …
A pre-training and self-training approach for biomedical named entity recognition
S Gao, O Kotevska, A Sorokine, JB Christian - PloS one, 2021 - journals.plos.org
Named entity recognition (NER) is a key component of many scientific literature mining
tasks, such as information retrieval, information extraction, and question answering; …
tasks, such as information retrieval, information extraction, and question answering; …
HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools
Motivation With the exponential growth of the life sciences literature, biomedical text mining
(BTM) has become an essential technology for accelerating the extraction of insights from …
(BTM) has become an essential technology for accelerating the extraction of insights from …