Named entity recognition and relation detection for biomedical information extraction

N Perera, M Dehmer, F Emmert-Streib - Frontiers in cell and …, 2020 - frontiersin.org
The number of scientific publications in the literature is steadily growing, containing our
knowledge in the biomedical, health, and clinical sciences. Since there is currently no …

Deep learning methods for biomedical named entity recognition: a survey and qualitative comparison

B Song, F Li, Y Liu, X Zeng - Briefings in Bioinformatics, 2021 - academic.oup.com
The biomedical literature is growing rapidly, and the extraction of meaningful information
from the large amount of literature is increasingly important. Biomedical named entity …

Advancing entity recognition in biomedicine via instruction tuning of large language models

VK Keloth, Y Hu, Q **e, X Peng, Y Wang… - …, 2024 - academic.oup.com
Abstract Motivation Large Language Models (LLMs) have the potential to revolutionize the
field of Natural Language Processing, excelling not only in text generation and reasoning …

A review on electronic health record text-mining for biomedical name entity recognition in healthcare domain

PN Ahmad, AM Shah, KY Lee - Healthcare, 2023 - mdpi.com
Biomedical-named entity recognition (bNER) is critical in biomedical informatics. It identifies
biomedical entities with special meanings, such as people, places, and organizations, as …

HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition

L Weber, M Sänger, J Münchmeyer, M Habibi… - …, 2021 - academic.oup.com
Named entity recognition (NER) is an important step in biomedical information extraction
pipelines. Tools for NER should be easy to use, cover multiple entity types, be highly …

Biomedical named entity recognition with multilingual BERT

K Hakala, S Pyysalo - Proceedings of the 5th workshop on BioNLP …, 2019 - aclanthology.org
We present the approach of the Turku NLP group to the PharmaCoNER task on Spanish
biomedical named entity recognition. We apply a CRF-based baseline approach and …

[HTML][HTML] The new version of the ANDDigest tool with improved AI-based short names recognition

TV Ivanisenko, PS Demenkov, NA Kolchanov… - International Journal of …, 2022 - mdpi.com
The body of scientific literature continues to grow annually. Over 1.5 million abstracts of
biomedical publications were added to the PubMed database in 2021. Therefore …

Cyclener: an unsupervised training approach for named entity recognition

A Iovine, A Fang, B Fetahu, O Rokhlenko… - Proceedings of the ACM …, 2022 - dl.acm.org
Named Entity Recognition (NER) is a crucial natural language understanding task for many
down-stream tasks such as question answering and retrieval. Despite significant progress in …

A pre-training and self-training approach for biomedical named entity recognition

S Gao, O Kotevska, A Sorokine, JB Christian - PloS one, 2021 - journals.plos.org
Named entity recognition (NER) is a key component of many scientific literature mining
tasks, such as information retrieval, information extraction, and question answering; …

HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools

M Sänger, S Garda, XD Wang, L Weber-Genzel… - …, 2024 - academic.oup.com
Motivation With the exponential growth of the life sciences literature, biomedical text mining
(BTM) has become an essential technology for accelerating the extraction of insights from …