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Neural data science: accelerating the experiment-analysis-theory cycle in large-scale neuroscience
Highlights•Modern recording technologies are creating data at a scale and complexity that
demand rigorous data analytical approaches.•Neural data science is an essential bridge …
demand rigorous data analytical approaches.•Neural data science is an essential bridge …
CaImAn an open source tool for scalable calcium imaging data analysis
Advances in fluorescence microscopy enable monitoring larger brain areas in-vivo with finer
time resolution. The resulting data rates require reproducible analysis pipelines that are …
time resolution. The resulting data rates require reproducible analysis pipelines that are …
Fast online deconvolution of calcium imaging data
Fluorescent calcium indicators are a popular means for observing the spiking activity of
large neuronal populations, but extracting the activity of each neuron from raw fluorescence …
large neuronal populations, but extracting the activity of each neuron from raw fluorescence …
Compartment-specific tuning of dendritic feature selectivity by intracellular Ca2+ release
Dendritic calcium signaling is central to neural plasticity mechanisms that allow animals to
adapt to the environment. Intracellular calcium release (ICR) from the endoplasmic reticulum …
adapt to the environment. Intracellular calcium release (ICR) from the endoplasmic reticulum …
Sexual arousal gates visual processing during Drosophila courtship
Long-lasting internal arousal states motivate and pattern ongoing behaviour, enabling the
temporary emergence of innate behavioural programs that serve the needs of an animal …
temporary emergence of innate behavioural programs that serve the needs of an animal …
Stimulus encoding by specific inactivation of cortical neurons
Neuronal ensembles are groups of neurons with correlated activity associated with sensory,
motor, and behavioral functions. To explore how ensembles encode information, we …
motor, and behavioral functions. To explore how ensembles encode information, we …
Long-term stability of cortical ensembles
Neuronal ensembles, coactive groups of neurons found in spontaneous and evoked cortical
activity, are causally related to memories and perception, but it is still unknown how stable or …
activity, are causally related to memories and perception, but it is still unknown how stable or …
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data
In recent years, two-photon calcium imaging has become a standard tool to probe the
function of neural circuits and to study computations in neuronal populations. However, the …
function of neural circuits and to study computations in neuronal populations. However, the …
Fast nonconvex deconvolution of calcium imaging data
Calcium imaging data promises to transform the field of neuroscience by making it possible
to record from large populations of neurons simultaneously. However, determining the exact …
to record from large populations of neurons simultaneously. However, determining the exact …
Multifocal fluorescence video-rate imaging of centimetre-wide arbitrarily shaped brain surfaces at micrometric resolution
Fluorescence microscopy allows for the high-throughput imaging of cellular activity across
brain areas in mammals. However, capturing rapid cellular dynamics across the curved …
brain areas in mammals. However, capturing rapid cellular dynamics across the curved …